Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   F0U64_RS00830 Genome accession   NZ_CP043820
Coordinates   194816..196261 (+) Length   481 a.a.
NCBI ID   WP_035182700.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain AX1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 189816..201261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U64_RS00815 (F0U64_00815) leuA 190898..192607 (-) 1710 WP_006386984.1 2-isopropylmalate synthase -
  F0U64_RS00820 (F0U64_00820) - 192998..193975 (-) 978 WP_006386985.1 tripartite tricarboxylate transporter substrate binding protein -
  F0U64_RS00825 (F0U64_00825) - 194167..194817 (-) 651 WP_149894723.1 hypothetical protein -
  F0U64_RS00830 (F0U64_00830) rpoN/rpoN1 194816..196261 (+) 1446 WP_035182700.1 RNA polymerase factor sigma-54 Machinery gene
  F0U64_RS00835 (F0U64_00835) - 196355..196561 (+) 207 WP_006386988.1 hypothetical protein -
  F0U64_RS00840 (F0U64_00840) - 196631..196909 (+) 279 WP_006386989.1 type II toxin-antitoxin system RelE/ParE family toxin -
  F0U64_RS00845 (F0U64_00845) - 197088..197387 (+) 300 WP_006386990.1 bacterioferritin-associated ferredoxin -
  F0U64_RS00850 (F0U64_00850) - 197357..198277 (-) 921 WP_006386991.1 LysR substrate-binding domain-containing protein -
  F0U64_RS00855 (F0U64_00855) - 198390..199304 (+) 915 WP_054498188.1 DMT family transporter -
  F0U64_RS00860 (F0U64_00860) bfr 199729..200205 (+) 477 WP_006386993.1 bacterioferritin -
  F0U64_RS00865 (F0U64_00865) - 200291..200989 (-) 699 WP_149894724.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52495.87 Da        Isoelectric Point: 4.8651

>NTDB_id=385987 F0U64_RS00830 WP_035182700.1 194816..196261(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain AX1]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPSSVETQAESERESSVQDDEP
APERDAPVEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSECLLLQLRNPDTARLPEAADPKALACARLVCAQHLALLATGNHARLCAA
VGCDEATLRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLANQKESAHAGL
QSQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=385987 F0U64_RS00830 WP_035182700.1 194816..196261(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain AX1]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGCCAGCATCTGACGCTGACCCCTCAATTGCA
GCAATCGATCCGGTTGCTGCAGCTGTCCACGCTCGAGCTCGAGGCGGAAATCTCGCAAGTGCTCGCCGACAATCCGTTGC
TGGAACGCGACGATGAGCCTTCCTCCGTCGAGACGCAGGCCGAATCCGAGCGCGAGTCGTCGGTGCAGGACGACGAACCC
GCGCCCGAGCGCGACGCCCCGGTCGAGGAAATGCCGGGTTCGGGCGGGGTCTACCCCGATGATGATTCCAGCCTGCCCGA
GGCCGCCCGGCCCGATACCCTGCGCGAGCACCTGCTCGGGCAACTGGTGCTGACCCGCGCCGCGCCGCGCGACGCCGCGC
TGGCGGCGCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGCTCGCCCCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGACGAGCTGCGCGCCGCGCTGTCGCTGCTGCAATCGTTCGACCCGGCCGGCATCGGCGC
GCGCGACATGTCTGAGTGCCTACTGTTGCAATTGCGCAATCCCGACACGGCCCGGTTGCCCGAGGCCGCGGATCCCAAGG
CGCTGGCCTGCGCCCGCCTGGTCTGCGCCCAGCATCTGGCGCTGCTGGCCACCGGCAACCATGCCAGGCTGTGCGCCGCG
GTCGGTTGTGACGAGGCCACGCTGCGCGCGGCGCACGCCCTGATCCTGCGTCTGGAGCCCCGTCCGGGCCGCGCCTGGAC
GGTCCCGGCGGCCGATTACGCCGTGCCCGACGTCATCGTGCGCAAGACGCGCCGCGGCTGGCAGGTGACGCTCAACAGCG
CCGCCGTGCCGCGACTGCAGATCAATGGCCTGTACGCCCAAATGCTGGCCAACCAGAAGGAGTCGGCCCACGCCGGCTTG
CAGTCTCAGCTGCAACAGGCGAAATGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGAGTGGCCCAGGC
CATTGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGCCCGCTCATCCTCAAGGACATTGCCGGCG
AGCTGGGCCTGCATGAGTCCACCATTTCACGCGCCACGACACAGAAGTACATGCTCACTCCCTTCGGTACGCTGGAGCTC
AAGCGCTTCTTCGGGGCGGGGGTGTCGACCGATGGCGGCGACGCCACATCCGCCACGGCGGTGCAGACTTTCATCCGCCA
GATGGTGGCCGAGGAGAACCGGGCCAAGCCGCTGTCCGACAGCCAGATCATGGAAAAACTGGCCGATCAGGGCATCGTCA
TCGCCCGCAGGACGGTCGCGAAATACCGCGAGGCACTGCGGATCGCGCCGGCCGCGCTGCGCAAGGCGCAGGCCGCGGCG
CGGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.505

100

0.52

Multiple sequence alignment