Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   F0T11_RS02335 Genome accession   NZ_CP043816
Coordinates   450283..450891 (+) Length   202 a.a.
NCBI ID   WP_050303746.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG251     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445283..455891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T11_RS02310 (F0T11_02600) - 445560..446141 (-) 582 WP_003687910.1 superoxide dismutase -
  F0T11_RS02315 (F0T11_02610) dnaB 446305..447711 (+) 1407 WP_050157387.1 replicative DNA helicase -
  F0T11_RS02320 (F0T11_02615) pilH 448019..448681 (+) 663 WP_050157402.1 GspH/FimT family pseudopilin Machinery gene
  F0T11_RS02325 (F0T11_02620) pilV 448713..449324 (+) 612 WP_164823800.1 type IV pilus modification protein PilV Machinery gene
  F0T11_RS02330 (F0T11_02625) pilJ 449321..450304 (+) 984 WP_164823233.1 PilW family protein Machinery gene
  F0T11_RS02335 (F0T11_02630) pilK 450283..450891 (+) 609 WP_050303746.1 pilus assembly PilX family protein Machinery gene
  F0T11_RS02340 (F0T11_02635) pilL 450893..451366 (+) 474 WP_174813111.1 PilX family type IV pilin Machinery gene
  F0T11_RS02345 (F0T11_02645) - 451978..452423 (-) 446 Protein_462 AzlC family ABC transporter permease -
  F0T11_RS02350 (F0T11_02650) dut 452589..453041 (+) 453 WP_050303745.1 dUTP diphosphatase -
  F0T11_RS02355 (F0T11_02655) dapC 453119..454306 (+) 1188 WP_164823235.1 succinyldiaminopimelate transaminase -
  F0T11_RS02360 (F0T11_02660) yaaA 454617..455396 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21978.95 Da        Isoelectric Point: 7.5809

>NTDB_id=385955 F0T11_RS02335 WP_050303746.1 450283..450891(+) (pilK) [Neisseria gonorrhoeae strain NG251]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=385955 F0T11_RS02335 WP_050303746.1 450283..450891(+) (pilK) [Neisseria gonorrhoeae strain NG251]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

90.64

100

0.911

Multiple sequence alignment