Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0T11_RS00270 Genome accession   NZ_CP043816
Coordinates   53431..56580 (-) Length   1049 a.a.
NCBI ID   WP_164823791.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48431..61580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T11_RS00250 (F0T11_00290) - 49501..49890 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  F0T11_RS00255 (F0T11_00295) - 50053..50432 (-) 380 Protein_48 VOC family protein -
  F0T11_RS00260 (F0T11_00300) carA 50486..51619 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  F0T11_RS00265 (F0T11_00310) - 52333..52617 (-) 285 WP_047918726.1 GIY-YIG nuclease family protein -
  F0T11_RS00270 (F0T11_00320) pilC 53431..56580 (-) 3150 WP_164823791.1 PilC family type IV pilus tip adhesin Machinery gene
  F0T11_RS00275 (F0T11_00325) apbC 57960..59039 (-) 1080 WP_164823792.1 iron-sulfur cluster carrier protein ApbC -
  F0T11_RS00285 (F0T11_00335) - 59413..59922 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  F0T11_RS00290 (F0T11_00345) nadR 60263..60703 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  F0T11_RS00295 (F0T11_00350) hpaC 60818..61318 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1049 a.a.        Molecular weight: 115501.83 Da        Isoelectric Point: 9.8198

>NTDB_id=385940 F0T11_RS00270 WP_164823791.1 53431..56580(-) (pilC) [Neisseria gonorrhoeae strain NG251]
MNKTLKRRVFRHTALYTAILMFSHTGGGGAMAQTHQYAIIMNERKQPEVKWKDQYNQSALKDKSRERTFSHTSQKNSLGI
TSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYTGIRCGSTKDCPKLT
YKTRFSFDNPDLLKTRGGLDRHTEPSRENSPIYKLKDYPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVYT
TEDHRISLSNWQQETTAMAYYLNAKLHLLDKKGIKDITGKTVRLGVLKPSIDVKTQNTGLSGILNFWSKWDIKDNGQIPV
KLGLPEVKAGRCINEPNPNKNTQAPSPALTAPALWFGSVQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDPARPGRHS
LAALDTQNIKSREPNFNSRQTVIRLPGGVYRIAPTRDRIVGLNGNDGKNDIFGIYKDRLVTPEVDEWAKVLLPWTVRYYG
NDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYEL
KLSYIPGTMERKDIEGNDSDLAKELRAFAEQGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYALDLTKI
DSNPVGVSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIVSGDNTTALYVYDLENGSGSLI
KKIEVKDGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSDNDPNKWSVRTIFEGGKPITSAPAVSRLADKRVVIF
GTGSDLSEEDVVGTNPQYIYGIFDDDKGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSNGKGWVVRLREGERV
TVKPTVVLRTAFVTIRSYTGMDKCGAQTAILGINTADGGALTPRSARPIVPDHNSVAQYSGHKKTTDGKSVPIGCMWKNS
KTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPGRNNRCFSGKGVRTLLMNDLDSLDITGPMCGIK
RLSWREVFF

Nucleotide


Download         Length: 3150 bp        

>NTDB_id=385940 F0T11_RS00270 WP_164823791.1 53431..56580(-) (pilC) [Neisseria gonorrhoeae strain NG251]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATACCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGAAGGATC
AATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACAGCCTCGGCATC
ACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTC
ATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACACCGGTATCCGTTGCGGAAGTACCAAAGACTGTCCCAAACTTACC
TATAAAACCCGATTTTCCTTCGATAATCCCGACTTGCTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAGCCG
CGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGTGTGTCTTTCAATTTGGGCGGCGAGGGTACCGCCA
AAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACG
ACAGAAGACCACCGTATTTCCCTTAGCAACTGGCAGCAAGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCTGCA
CCTGCTGGACAAAAAAGGGATTAAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGA
AGACACAAAATACGGGGCTTAGCGGCATTCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTC
AAGCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACGAACCGAACCCCAATAAGAATACCCAAGCCCCTTCGCC
GGCACTGACCGCCCCCGCGCTGTGGTTCGGCTCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCT
ACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACCCCGCCCGGCCCGGCCGGCATTCC
CTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGG
CGGCGTGTACCGGATCGCCCCGACTCGCGACAGGATCGTGGGTTTGAATGGCAATGACGGCAAAAACGACATTTTCGGCA
TCTACAAGGACAGGCTCGTCACACCTGAGGTCGACGAGTGGGCAAAAGTGCTGCTGCCTTGGACGGTCCGGTATTACGGT
AATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCG
CATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCG
GGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAACTG
AAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTCGCCAAAGAGCTGCGCGC
CTTTGCCGAACAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAAG
ACAAGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCATACGCCTTGGATTTGACCAAAATC
GACAGCAACCCGGTCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAATGACAGTAATCGCGTGAA
ATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCTTCCGGTTATG
CGGCTAAAGATATTGTCAGCGGCGATAATACAACCGCGCTGTATGTATATGATTTGGAAAACGGCAGTGGTAGTCTGATT
AAAAAAATCGAAGTGAAGGACGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGA
TATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGACAACGACCCGAACAAATGGTCTGTAC
GCACTATTTTCGAAGGCGGGAAGCCGATTACTTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTCGTCATCTTC
GGCACGGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTACGAATCCACAATATATTTACGGTATCTTTGACGACGATAA
GGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGTTGCTCGAGCAAACGCTTACGAAGGAAAATAACACCT
TGTTCCTGAGCAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGGTGGGTAGTGAGATTGAGGGAAGGAGAACGCGTT
ACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGCAGCTATACGGGCATGGACAAATGTGGCGCGCA
AACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACA
ATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCACCGACGGCAAGTCCGTCCCCATAGGCTGTATGTGGAAAAACAGC
AAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTT
CCCCGTCACGGCAGACGGCGATGCGGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGGCCGCAATAACCGGTGCT
TCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAA
CGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(521-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.471

100

0.701

Multiple sequence alignment