Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | F0T12_RS03915 | Genome accession | NZ_CP043812 |
| Coordinates | 768013..769758 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain NG290 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 732829..807882 | 768013..769758 | within | 0 |
| IS/Tn | 770445..771446 | 768013..769758 | flank | 687 |
Gene organization within MGE regions
Location: 732829..807882
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0T12_RS03745 (F0T12_04150) | - | 732829..733899 (-) | 1071 | WP_003693067.1 | tyrosine-type recombinase/integrase | - |
| F0T12_RS03750 (F0T12_04155) | - | 734108..734887 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| F0T12_RS03755 (F0T12_04170) | - | 735479..735688 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| F0T12_RS03760 (F0T12_04175) | dinB | 735787..736845 (+) | 1059 | WP_041421282.1 | DNA polymerase IV | - |
| F0T12_RS03765 (F0T12_04180) | rep | 736915..738930 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| F0T12_RS03770 (F0T12_04185) | aroD | 738950..739714 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| F0T12_RS03775 (F0T12_04190) | recA | 739914..740960 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| F0T12_RS03780 (F0T12_04195) | - | 741620..741955 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| F0T12_RS03785 (F0T12_04200) | dnaX | 742036..744159 (-) | 2124 | WP_047919488.1 | DNA polymerase III subunit gamma/tau | - |
| F0T12_RS03790 (F0T12_04205) | mutL | 744254..746230 (-) | 1977 | WP_050157588.1 | DNA mismatch repair endonuclease MutL | - |
| F0T12_RS03795 (F0T12_04210) | - | 746374..746559 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| F0T12_RS03800 (F0T12_04215) | - | 746570..747238 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| F0T12_RS03805 (F0T12_04220) | - | 747238..747951 (+) | 714 | WP_003688685.1 | tetratricopeptide repeat protein | - |
| F0T12_RS03810 (F0T12_04225) | purE | 747999..748484 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| F0T12_RS03815 (F0T12_04230) | - | 748696..749553 (-) | 858 | Protein_754 | transposase | - |
| F0T12_RS03820 (F0T12_04235) | - | 749870..750235 (+) | 366 | Protein_755 | transposase | - |
| F0T12_RS03825 (F0T12_04240) | - | 750242..751267 (+) | 1026 | Protein_756 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| F0T12_RS03830 (F0T12_04245) | - | 751462..752118 (-) | 657 | WP_003688682.1 | response regulator | - |
| F0T12_RS03835 (F0T12_04250) | - | 752115..753884 (-) | 1770 | WP_003695308.1 | histidine kinase | - |
| F0T12_RS03840 (F0T12_04255) | - | 754091..754705 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| F0T12_RS03845 (F0T12_04260) | - | 754868..755485 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| F0T12_RS03850 (F0T12_04265) | - | 755493..756356 (+) | 864 | WP_003688678.1 | ATP-binding protein | - |
| F0T12_RS03855 (F0T12_04270) | - | 756369..756803 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| F0T12_RS03860 (F0T12_04275) | rpe | 756949..757632 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| F0T12_RS03865 (F0T12_04285) | ruvB | 757877..758908 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| F0T12_RS03870 (F0T12_04290) | - | 758990..759298 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| F0T12_RS03875 (F0T12_04300) | - | 759717..760949 (-) | 1233 | WP_003688669.1 | multifunctional CCA addition/repair protein | - |
| F0T12_RS03880 (F0T12_04305) | - | 761028..762656 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| F0T12_RS03885 (F0T12_04310) | - | 762806..763180 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| F0T12_RS03890 (F0T12_04315) | - | 763229..764767 (+) | 1539 | WP_164823247.1 | SurA N-terminal domain-containing protein | - |
| F0T12_RS03895 (F0T12_04320) | recR | 764834..765451 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| F0T12_RS03900 (F0T12_04325) | - | 765507..765785 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| F0T12_RS03905 (F0T12_04340) | - | 766011..767258 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| F0T12_RS03910 (F0T12_04345) | lolD | 767251..767946 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| F0T12_RS03915 (F0T12_04350) | recD | 768013..769758 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| F0T12_RS03920 (F0T12_04355) | - | 769830..770476 (-) | 647 | Protein_775 | methyltransferase | - |
| F0T12_RS03925 (F0T12_04360) | - | 770484..771446 (+) | 963 | WP_047951707.1 | IS110 family transposase | - |
| F0T12_RS03930 (F0T12_04365) | - | 771575..772034 (-) | 460 | Protein_777 | methyltransferase | - |
| F0T12_RS03935 (F0T12_04375) | lon | 772286..774748 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| F0T12_RS03940 (F0T12_04380) | - | 774930..775199 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| F0T12_RS03945 (F0T12_04385) | - | 775376..775810 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| F0T12_RS03950 (F0T12_04390) | - | 775803..777110 (-) | 1308 | WP_003697095.1 | homoserine dehydrogenase | - |
| F0T12_RS03955 (F0T12_04395) | - | 777306..777677 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| F0T12_RS03960 (F0T12_04400) | - | 777754..779676 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| F0T12_RS03965 (F0T12_04405) | - | 779663..780058 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| F0T12_RS03970 (F0T12_04410) | - | 780149..780661 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| F0T12_RS03975 (F0T12_04415) | - | 781091..781786 (-) | 696 | WP_033909960.1 | DUF4400 domain-containing protein | - |
| F0T12_RS03980 (F0T12_04420) | traD | 781776..783818 (-) | 2043 | WP_047919030.1 | type IV conjugative transfer system coupling protein TraD | - |
| F0T12_RS03985 (F0T12_04425) | mobH | 783815..786367 (-) | 2553 | WP_050157285.1 | MobH family relaxase | - |
| F0T12_RS03990 (F0T12_04430) | - | 786364..786783 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| F0T12_RS03995 (F0T12_04435) | - | 787294..787755 (+) | 462 | WP_003693105.1 | lytic transglycosylase domain-containing protein | - |
| F0T12_RS04000 (F0T12_04440) | - | 787725..788246 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| F0T12_RS04005 (F0T12_04445) | traA | 788302..788598 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| F0T12_RS04010 (F0T12_04450) | traL | 788620..788901 (+) | 282 | WP_050157287.1 | type IV conjugative transfer system protein TraL | - |
| F0T12_RS04015 (F0T12_04455) | - | 788898..789563 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| F0T12_RS04020 (F0T12_04460) | - | 789565..790299 (+) | 735 | WP_003695279.1 | TraK domain-containing protein | - |
| F0T12_RS04025 (F0T12_04465) | - | 790301..791614 (+) | 1314 | WP_050157289.1 | TrbI/VirB10 family protein | - |
| F0T12_RS04030 (F0T12_04470) | - | 791624..792343 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| F0T12_RS04035 (F0T12_04475) | - | 792340..792921 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| F0T12_RS04040 (F0T12_04480) | traC | 792931..795507 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| F0T12_RS04045 (F0T12_04485) | - | 795535..796083 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| F0T12_RS04050 (F0T12_04490) | - | 796083..796628 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| F0T12_RS04055 (F0T12_04495) | - | 796637..797293 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| F0T12_RS04060 (F0T12_04500) | - | 797455..798408 (+) | 954 | WP_228841907.1 | TraU family protein | - |
| F0T12_RS04065 (F0T12_04505) | trbC | 798423..799175 (+) | 753 | WP_003693132.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| F0T12_RS04070 (F0T12_04510) | - | 799172..800416 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| F0T12_RS04075 (F0T12_04515) | traN | 800455..801996 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| F0T12_RS04080 (F0T12_04520) | - | 801983..802408 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| F0T12_RS04085 (F0T12_04525) | - | 802420..803196 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| F0T12_RS04090 (F0T12_04530) | - | 803368..804873 (+) | 1506 | WP_017147074.1 | conjugal transfer protein TraH | - |
| F0T12_RS04095 (F0T12_04535) | - | 804880..807882 (+) | 3003 | WP_047919761.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=385915 F0T12_RS03915 WP_003688652.1 768013..769758(+) (recD) [Neisseria gonorrhoeae strain NG290]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=385915 F0T12_RS03915 WP_003688652.1 768013..769758(+) (recD) [Neisseria gonorrhoeae strain NG290]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCTTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCTTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |