Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   HPSJM_RS07530 Genome accession   NC_014560
Coordinates   1575251..1576690 (-) Length   479 a.a.
NCBI ID   WP_000748980.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1559589..1581710 1575251..1576690 within 0


Gene organization within MGE regions


Location: 1559589..1581710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS07475 (HPSJM_07735) - 1559589..1560026 (-) 438 WP_000248402.1 Panacea domain-containing protein -
  HPSJM_RS07480 (HPSJM_07740) - 1560251..1561879 (-) 1629 WP_000928770.1 RNA-directed DNA polymerase -
  HPSJM_RS07485 (HPSJM_07750) - 1562596..1566354 (-) 3759 WP_000589117.1 class I SAM-dependent DNA methyltransferase -
  HPSJM_RS07490 - 1566460..1569369 (-) 2910 Protein_1451 DEAD/DEAH box helicase family protein -
  HPSJM_RS08385 (HPSJM_07765) - 1569372..1569965 (-) 594 WP_001271208.1 site-specific DNA-methyltransferase -
  HPSJM_RS07500 (HPSJM_07770) - 1569962..1571341 (-) 1380 WP_013356482.1 site-specific DNA-methyltransferase -
  HPSJM_RS07505 (HPSJM_07775) recG 1571383..1573254 (-) 1872 WP_001158341.1 ATP-dependent DNA helicase RecG -
  HPSJM_RS07510 (HPSJM_07780) - 1573336..1573683 (+) 348 WP_000837035.1 hypothetical protein -
  HPSJM_RS07515 (HPSJM_07785) - 1573687..1574322 (+) 636 WP_000765636.1 outer membrane protein -
  HPSJM_RS07520 (HPSJM_07790) - 1574319..1575071 (-) 753 WP_000767512.1 exodeoxyribonuclease III -
  HPSJM_RS07530 (HPSJM_07795) comH 1575251..1576690 (-) 1440 WP_000748980.1 hypothetical protein Machinery gene
  HPSJM_RS07540 (HPSJM_07800) dnaA 1576919..1578286 (-) 1368 WP_000380620.1 chromosomal replication initiator protein DnaA -
  HPSJM_RS07545 (HPSJM_07805) - 1578440..1578982 (+) 543 WP_013356483.1 purine-nucleoside phosphorylase -
  HPSJM_RS07550 (HPSJM_07810) - 1579027..1579266 (+) 240 WP_000461837.1 DUF2443 domain-containing protein -
  HPSJM_RS07555 (HPSJM_07815) glmS 1579267..1581060 (+) 1794 WP_000334411.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  HPSJM_RS07560 (HPSJM_07820) thyX 1581084..1581710 (+) 627 WP_000451922.1 FAD-dependent thymidylate synthase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54804.76 Da        Isoelectric Point: 6.9526

>NTDB_id=38591 HPSJM_RS07530 WP_000748980.1 1575251..1576690(-) (comH) [Helicobacter pylori SJM180]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHPHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
AIPSKISPTNEVKTPTTDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADINENNESNENRDNVEKQAVRDANVKEFA
CGKWVYDDENLQAYRPSILKRVDEDRQTATDITPCDYSTAENKSGKIITPYTKISIHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITRNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=38591 HPSJM_RS07530 WP_000748980.1 1575251..1576690(-) (comH) [Helicobacter pylori SJM180]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACCTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCGCACCCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAACCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTGCAGCCTTTA
GCAATTCCTAGCAAAATAAGTCCCACTAACGAAGTTAAAACGCCAACAACCGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
ATGAAAACAATGAAAGTAACGAAAACAGGGATAATGTGGAAAAACAAGCCGTTAGAGATGCTAATGTTAAAGAATTTGCA
TGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAGACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTATTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGTAAAAGGGCTAGAGCGAGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAAAGTGAGTATGAAATCACCACACAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AAGTAGAGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAGAGCAGCGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

96.451

100

0.965

Multiple sequence alignment