Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FU792_RS18880 Genome accession   NZ_CP043808
Coordinates   2237980..2238159 (-) Length   59 a.a.
NCBI ID   WP_338101116.1    Uniprot ID   -
Organism   Serinicoccus marinus DSM 15273     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2232980..2243159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FU792_RS10590 - 2233562..2234611 (-) 1050 WP_022924922.1 class I SAM-dependent methyltransferase -
  FU792_RS10595 - 2234700..2234927 (-) 228 WP_022924923.1 DUF3046 domain-containing protein -
  FU792_RS10600 - 2234942..2235859 (-) 918 WP_022924924.1 AEC family transporter -
  FU792_RS10605 - 2235925..2237922 (+) 1998 WP_022924925.1 carboxyl transferase domain-containing protein -
  FU792_RS18880 rcrQ 2237980..2238159 (-) 180 WP_338101116.1 hypothetical protein Regulator
  FU792_RS10610 - 2238156..2239741 (-) 1586 Protein_2183 ABC transporter ATP-binding protein -
  FU792_RS17945 - 2239935..2240144 (-) 210 WP_238705970.1 hypothetical protein -
  FU792_RS17950 - 2240144..2240572 (-) 429 WP_238705971.1 ATP-binding cassette domain-containing protein -
  FU792_RS17955 - 2240739..2241878 (-) 1140 WP_149814748.1 ABC transporter transmembrane domain-containing protein -
  FU792_RS10625 - 2241985..2242206 (+) 222 WP_022924928.1 hypothetical protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6453.28 Da        Isoelectric Point: 6.0471

>NTDB_id=385891 FU792_RS18880 WP_338101116.1 2237980..2238159(-) (rcrQ) [Serinicoccus marinus DSM 15273]
MNALLTGRTVVAIAHRLHTAHDADRIAVVQDGRVVELGSHDELMAAEGEYAALWRAWTS

Nucleotide


Download         Length: 180 bp        

>NTDB_id=385891 FU792_RS18880 WP_338101116.1 2237980..2238159(-) (rcrQ) [Serinicoccus marinus DSM 15273]
ATGAACGCCCTGCTCACCGGGCGCACCGTGGTCGCGATCGCGCACCGGCTGCACACGGCGCACGACGCCGACCGCATCGC
GGTGGTGCAGGACGGCCGCGTCGTCGAGCTCGGCAGCCACGACGAGCTCATGGCCGCCGAGGGGGAGTACGCCGCGCTCT
GGCGGGCCTGGACCAGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.786

94.915

0.492
  comA Streptococcus gordonii str. Challis substr. CH1

42.308

88.136

0.373

Multiple sequence alignment