Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPSJM_RS06610 Genome accession   NC_014560
Coordinates   1363966..1365279 (-) Length   437 a.a.
NCBI ID   WP_000653567.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358966..1370279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS06580 (HPSJM_06800) nadC 1359429..1360250 (-) 822 WP_000404092.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPSJM_RS06585 (HPSJM_06805) nadA 1360250..1361260 (-) 1011 WP_001141839.1 quinolinate synthase NadA -
  HPSJM_RS06590 (HPSJM_06810) - 1361250..1362053 (-) 804 WP_000226211.1 phosphatidylserine decarboxylase -
  HPSJM_RS06595 (HPSJM_06815) - 1362047..1362553 (-) 507 WP_000953087.1 DUF6115 domain-containing protein -
  HPSJM_RS06600 (HPSJM_06820) - 1362566..1363060 (-) 495 WP_013356461.1 hypothetical protein -
  HPSJM_RS06605 (HPSJM_06825) mqnP 1363053..1363895 (-) 843 WP_228839812.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPSJM_RS06610 (HPSJM_06830) comEC/comE3 1363966..1365279 (-) 1314 WP_000653567.1 ComEC/Rec2 family competence protein Machinery gene
  HPSJM_RS06615 (HPSJM_06835) - 1365276..1366736 (-) 1461 WP_000349739.1 replicative DNA helicase -
  HPSJM_RS06620 (HPSJM_06840) - 1366747..1368141 (-) 1395 WP_000954044.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPSJM_RS06625 (HPSJM_06845) crdS 1368144..1369346 (-) 1203 WP_079995603.1 copper-sensing histidine kinase CrdS -
  HPSJM_RS06630 (HPSJM_06850) crdR 1369312..1369953 (-) 642 WP_001169754.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50028.99 Da        Isoelectric Point: 9.8460

>NTDB_id=38588 HPSJM_RS06610 WP_000653567.1 1363966..1365279(-) (comEC/comE3) [Helicobacter pylori SJM180]
MKDKTFQGAFELLATPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHSIDSAHSSALVGNLYRALFIGDIL
NKDLRDKANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLARSFQAISLS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNVLSMPLTIPTISVSSPLWLLGVHLLLT
ILSARSFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=38588 HPSJM_RS06610 WP_000653567.1 1363966..1365279(-) (comEC/comE3) [Helicobacter pylori SJM180]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
GGCGCCATTCCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATATCTTG
AATAAGGATTTAAGAGACAAAGCCAACGCACTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
AAGCATGAGCGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTACATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATAATG
TTCTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGTGCATTTGCTTTTAACG
ATTTTGAGTGCGCGTTCTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(160-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment