Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F1527_RS14185 Genome accession   NZ_CP043773
Coordinates   2850230..2850838 (-) Length   202 a.a.
NCBI ID   WP_001202378.1    Uniprot ID   A0A5C2M081
Organism   Salmonella enterica strain QH     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2845230..2855838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1527_RS14170 (F1527_14170) helD 2845447..2847501 (-) 2055 WP_000420529.1 DNA helicase IV -
  F1527_RS14175 (F1527_14175) - 2847625..2848071 (+) 447 WP_001261222.1 YccF domain-containing protein -
  F1527_RS14180 (F1527_14180) yccS 2848090..2850243 (+) 2154 WP_000950883.1 YccS family putative transporter -
  F1527_RS14185 (F1527_14185) sxy/tfoX 2850230..2850838 (-) 609 WP_001202378.1 TfoX/Sxy family DNA transformation protein Regulator
  F1527_RS14190 (F1527_14190) sulA 2851055..2851564 (+) 510 WP_000288731.1 SOS-induced cell division inhibitor SulA -
  F1527_RS14195 (F1527_14195) ompA 2851921..2852973 (+) 1053 WP_001539650.1 porin OmpA -
  F1527_RS14200 (F1527_14200) matP 2853045..2853497 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  F1527_RS14205 (F1527_14205) - 2853683..2855443 (+) 1761 WP_000156451.1 AAA family ATPase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23338.12 Da        Isoelectric Point: 8.7288

>NTDB_id=385876 F1527_RS14185 WP_001202378.1 2850230..2850838(-) (sxy/tfoX) [Salmonella enterica strain QH]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQS
NPLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 609 bp        

>NTDB_id=385876 F1527_RS14185 WP_001202378.1 2850230..2850838(-) (sxy/tfoX) [Salmonella enterica strain QH]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTATTCTCTTGACGCGGC
AATGAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGC
TCAATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGC
AATCCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAG
TCGTCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-195)

TfoX N-terminal domain (TfoX_N)

(14-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C2M081

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.5

99.01

0.748

Multiple sequence alignment