Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   F1539_RS06110 Genome accession   NZ_CP043772
Coordinates   1183576..1185942 (+) Length   788 a.a.
NCBI ID   WP_013525419.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178576..1190942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS06085 (F1539_06090) - 1178926..1180224 (-) 1299 WP_005649777.1 N-acetylmuramoyl-L-alanine amidase -
  F1539_RS06090 (F1539_06095) tsaE 1180232..1180708 (-) 477 WP_013525421.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  F1539_RS06095 (F1539_06100) folK 1180784..1181266 (-) 483 WP_006995701.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  F1539_RS06100 (F1539_06105) pcnB 1181275..1182633 (-) 1359 WP_013525420.1 polynucleotide adenylyltransferase PcnB -
  F1539_RS06105 (F1539_06110) dksA 1182880..1183317 (-) 438 WP_005630220.1 RNA polymerase-binding protein DksA -
  F1539_RS06110 (F1539_06115) rec2 1183576..1185942 (+) 2367 WP_013525419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  F1539_RS06115 (F1539_06120) msbA 1185983..1187746 (+) 1764 WP_005663238.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  F1539_RS06120 (F1539_06125) lpxK 1187819..1188817 (+) 999 WP_013525418.1 tetraacyldisaccharide 4'-kinase -
  F1539_RS06125 (F1539_06130) kdsB 1188888..1189652 (+) 765 WP_013525417.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89493.13 Da        Isoelectric Point: 9.9841

>NTDB_id=385842 F1539_RS06110 WP_013525419.1 1183576..1185942(+) (rec2) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAFGTVKSAVKIANVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQSNTAHLIAISGLHIGLAM
GIGFCLARVVQVFCPTRFIHPYFPLVFSVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTVVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWRIYREPE
ISSSNWQIKRAKFFTLNLSKPLLKNERINVLLCSFGIILLCFMILLFKQFSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGAATILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILFPHNVATRADNPHSCVILVYDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTTFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=385842 F1539_RS06110 WP_013525419.1 1183576..1185942(+) (rec2) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAG
GGGATTACCGCTTTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGAATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTGGATA
AAACCACTTGGTCAATTTACCAACAAAGCAATACTGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGGATTGGATTTTGCTTGGCGCGTGTTGTGCAAGTCTTTTGCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TAGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGGTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGGGCGGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTTCTCCAAAAGTGCGGTGGATTTTTAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTAAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTACCGAGAACCCGAG
ATTTCATCATCAAACTGGCAAATAAAACGAGCAAAATTTTTTACATTGAATCTCAGTAAACCTTTACTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTTTACTGTGTTTTATGATTTTGTTGTTTAAACAATTTAGTAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTGCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTTTCCTCACAACGTTGCGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCTATGA
TGGAAAGCATAGCGTTTTGCTAACTGGCGATGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
CATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-171)

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

96.447

100

0.964

Multiple sequence alignment