Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   F1538_RS05190 Genome accession   NZ_CP043771
Coordinates   1043260..1043772 (-) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE15/F3028     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038260..1048772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1538_RS05175 (F1538_05185) comQ 1041566..1041853 (-) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene
  F1538_RS05180 (F1538_05190) comP 1041846..1042529 (-) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  F1538_RS05185 (F1538_05195) comO 1042544..1043260 (-) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  F1538_RS05190 (F1538_05200) comN 1043260..1043772 (-) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F1538_RS05195 (F1538_05205) suhB 1043972..1044775 (+) 804 WP_013526184.1 inositol-1-monophosphatase -
  F1538_RS05200 (F1538_05210) nrfE 1044884..1046791 (+) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  F1538_RS05205 (F1538_05215) - 1046791..1047321 (+) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -
  F1538_RS05210 (F1538_05220) nrfF 1047318..1048475 (+) 1158 WP_013526187.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=385806 F1538_RS05190 WP_013526183.1 1043260..1043772(-) (comN) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=385806 F1538_RS05190 WP_013526183.1 1043260..1043772(-) (comN) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCACCTAAAACAATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment