Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   F1538_RS05180 Genome accession   NZ_CP043771
Coordinates   1041846..1042529 (-) Length   227 a.a.
NCBI ID   WP_013526181.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE15/F3028     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036846..1047529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1538_RS05165 (F1538_05175) nrdR 1037636..1038085 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  F1538_RS05170 (F1538_05180) recC 1038140..1041520 (-) 3381 WP_041174963.1 exodeoxyribonuclease V subunit gamma -
  F1538_RS05175 (F1538_05185) comQ 1041566..1041853 (-) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene
  F1538_RS05180 (F1538_05190) comP 1041846..1042529 (-) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  F1538_RS05185 (F1538_05195) comO 1042544..1043260 (-) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  F1538_RS05190 (F1538_05200) comN 1043260..1043772 (-) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F1538_RS05195 (F1538_05205) suhB 1043972..1044775 (+) 804 WP_013526184.1 inositol-1-monophosphatase -
  F1538_RS05200 (F1538_05210) nrfE 1044884..1046791 (+) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  F1538_RS05205 (F1538_05215) - 1046791..1047321 (+) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25441.25 Da        Isoelectric Point: 9.5163

>NTDB_id=385804 F1538_RS05180 WP_013526181.1 1041846..1042529(-) (comP) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MTTQKGIITLTILIFISGLLTAFLLLDDNHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGSTDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVTGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=385804 F1538_RS05180 WP_013526181.1 1041846..1042529(-) (comP) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGACAACACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACTGCGTTTTTATTGTTGGA
TGACAACCATTTAAGTTTTTTTCGTGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTTCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGACTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

98.678

100

0.987

Multiple sequence alignment