Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FZN58_RS07245 Genome accession   NZ_CP043763
Coordinates   1415935..1416246 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain BfR-CA-14430     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410935..1421246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN58_RS07225 (FZN58_07225) ctsE 1411804..1413363 (-) 1560 WP_052802022.1 GspE/PulE family protein Machinery gene
  FZN58_RS07230 (FZN58_07230) ctsX 1413353..1413940 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  FZN58_RS07235 (FZN58_07235) ctsP 1413944..1414552 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  FZN58_RS07240 (FZN58_07240) ctsD 1414545..1415957 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FZN58_RS07245 (FZN58_07245) ctsR 1415935..1416246 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  FZN58_RS07250 (FZN58_07250) nifJ 1416270..1419830 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FZN58_RS07255 (FZN58_07255) - 1419923..1420564 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=385760 FZN58_RS07245 WP_015016496.1 1415935..1416246(-) (ctsR) [Campylobacter jejuni strain BfR-CA-14430]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=385760 FZN58_RS07245 WP_015016496.1 1415935..1416246(-) (ctsR) [Campylobacter jejuni strain BfR-CA-14430]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment