Detailed information NTG0385701

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHM36_RS07260
• Genome accession: NZ_CP051615
• Coordinates: 1508452..1509444 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25b:H4-ST131 strain 2017_APHA
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1503452..1514444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHM36_RS07240 (HHM36_07240)	ygbM	1504090..1504866 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
HHM36_RS07245 (HHM36_07245)	ygbN	1504955..1506319 (+)	1365	WP_000104433.1	GntP family transporter	-
HHM36_RS07250 (HHM36_07250)	-	1506462..1507505 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
HHM36_RS07255 (HHM36_07255)	-	1507730..1508281 (+)	552	WP_001179444.1	flavodoxin family protein	-
HHM36_RS07260 (HHM36_07260)	rpoS	1508452..1509444 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHM36_RS07265 (HHM36_07265)	nlpD	1509507..1510601 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
HHM36_RS07270 (HHM36_07270)	pcm	1510786..1511412 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHM36_RS07275 (HHM36_07275)	surE	1511406..1512167 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHM36_RS07280 (HHM36_07280)	truD	1512148..1513197 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
HHM36_RS07285 (HHM36_07285)	ispF	1513194..1513673 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHM36_RS07290 (HHM36_07290)	ispD	1513673..1514383 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=385701 HHM36_RS07260 WP_000081550.1 1508452..1509444(-) (rpoS) [Escherichia coli O25b:H4-ST131 strain 2017_APHA]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=385701 HHM36_RS07260 WP_000081550.1 1508452..1509444(-) (rpoS) [Escherichia coli O25b:H4-ST131 strain 2017_APHA]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715