Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPPC_RS06480 Genome accession   NC_014555
Coordinates   1339033..1340346 (-) Length   437 a.a.
NCBI ID   WP_000653594.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334033..1345346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS06450 (HPPC_06665) nadC 1334496..1335317 (-) 822 WP_000404044.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPPC_RS06455 (HPPC_06670) nadA 1335317..1336327 (-) 1011 WP_001141773.1 quinolinate synthase NadA -
  HPPC_RS06460 (HPPC_06675) - 1336317..1337120 (-) 804 WP_000561117.1 phosphatidylserine decarboxylase -
  HPPC_RS06465 (HPPC_06680) - 1337117..1337620 (-) 504 WP_000953076.1 DUF6115 domain-containing protein -
  HPPC_RS06470 (HPPC_06685) - 1337633..1338127 (-) 495 WP_013356233.1 hypothetical protein -
  HPPC_RS06475 (HPPC_06690) mqnP 1338120..1339004 (-) 885 WP_000913959.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPPC_RS06480 (HPPC_06695) comEC/comE3 1339033..1340346 (-) 1314 WP_000653594.1 ComEC/Rec2 family competence protein Machinery gene
  HPPC_RS06485 (HPPC_06700) - 1340343..1341803 (-) 1461 WP_000349775.1 replicative DNA helicase -
  HPPC_RS06490 (HPPC_06705) - 1341814..1343208 (-) 1395 WP_000954038.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPPC_RS06495 (HPPC_06710) crdS 1343211..1344413 (-) 1203 WP_079995016.1 copper-sensing histidine kinase CrdS -
  HPPC_RS06500 (HPPC_06715) crdR 1344379..1345020 (-) 642 WP_001169816.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50413.53 Da        Isoelectric Point: 9.9822

>NTDB_id=38568 HPPC_RS06480 WP_000653594.1 1339033..1340346(-) (comEC/comE3) [Helicobacter pylori PeCan4]
MKDKTFQGAFELLSTPKEYLWCGVILSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKHNFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGILVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=38568 HPPC_RS06480 WP_000653594.1 1339033..1340346(-) (comEC/comE3) [Helicobacter pylori PeCan4]
TTGAAAGATAAGACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCGACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGATTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAGACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCCTAAGT
GCGCTAATTTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTATTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment