Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F1C16_RS16190 Genome accession   NZ_CP043644
Coordinates   3852634..3854022 (-) Length   462 a.a.
NCBI ID   WP_185281655.1    Uniprot ID   -
Organism   Hymenobacter sp. NBH84     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3847634..3859022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1C16_RS16170 (F1C16_16095) - 3847956..3848810 (+) 855 WP_185281652.1 pirin family protein -
  F1C16_RS16175 (F1C16_16100) - 3848927..3849703 (+) 777 WP_258048938.1 DUF2490 domain-containing protein -
  F1C16_RS16180 (F1C16_16105) - 3849708..3850730 (-) 1023 WP_185281653.1 SPASM domain-containing protein -
  F1C16_RS16185 (F1C16_16110) - 3850885..3852303 (-) 1419 WP_185281654.1 TlpA disulfide reductase family protein -
  F1C16_RS16190 (F1C16_16115) radA 3852634..3854022 (-) 1389 WP_185281655.1 DNA repair protein RadA Machinery gene
  F1C16_RS16195 (F1C16_16120) - 3854574..3855875 (+) 1302 WP_185281656.1 hypothetical protein -
  F1C16_RS16200 (F1C16_16125) - 3855909..3857336 (+) 1428 WP_185281657.1 T9SS type A sorting domain-containing protein -
  F1C16_RS23240 (F1C16_16130) - 3857522..3858907 (+) 1386 WP_185281658.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50202.67 Da        Isoelectric Point: 6.5023

>NTDB_id=385605 F1C16_RS16190 WP_185281655.1 3852634..3854022(-) (radA) [Hymenobacter sp. NBH84]
MAKIKTLYFCQNCGAQSVKWIGRCPSCGEWNTYVEEVVQKEDTKVAGSWKPPTAAPTLSKVAKPRPVSEIHYEEEARIAT
QDGELNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIAMSLRRLKVLYVSGEESEQQIKMRAERLGDQHPGCYILTETNTQ
NIFKQIDQLQPNILIIDSIQTLHSGLVESGAGSVSQVRECTAELLKYAKETGVPVMLIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGAGLRQVSNPSEILLSQRHGEELSGMAIGATLEGNRPLLVEVQALVT
PATYGTPQRSATGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLDDPALDLAVCAAVVSSLNDIPIRGEVCLAAE
VGLSGEIRAVSRLDQRLGEAEKLGFAEMYISQFNARGLDLARYGIRVQPAGRLDEVLSGLFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=385605 F1C16_RS16190 WP_185281655.1 3852634..3854022(-) (radA) [Hymenobacter sp. NBH84]
ATGGCCAAGATCAAAACCCTTTATTTCTGCCAGAACTGTGGGGCACAATCCGTGAAGTGGATCGGCCGCTGCCCCAGCTG
CGGCGAGTGGAATACCTACGTGGAGGAAGTGGTGCAGAAAGAAGACACCAAAGTGGCGGGCTCCTGGAAGCCCCCTACCG
CGGCGCCTACCCTTAGTAAAGTGGCCAAGCCCCGGCCCGTAAGCGAGATTCACTACGAAGAAGAAGCCCGCATTGCCACC
CAGGACGGCGAGCTGAACCGGGTGCTGGGCGGCGGCATTGTGCCCGGCTCGCTGGTGCTCATCGGCGGCGAGCCGGGCAT
CGGCAAAAGCACGCTGATGTTGCAGATTGCCATGTCGCTCAGGCGGTTGAAGGTGCTCTACGTGTCGGGCGAGGAAAGCG
AGCAGCAGATCAAGATGCGCGCCGAGCGCCTGGGCGACCAGCACCCCGGCTGCTACATCCTCACCGAAACCAACACCCAG
AACATCTTCAAGCAGATTGACCAGCTTCAGCCCAACATCCTCATCATCGACTCCATCCAAACCCTGCACTCGGGGCTGGT
AGAGTCGGGGGCGGGCTCGGTGAGCCAAGTGCGCGAATGCACCGCCGAGCTGCTGAAGTACGCCAAGGAAACCGGCGTGC
CGGTGATGCTCATCGGCCATATCACCAAAGACGGCAGTATTGCCGGCCCCAAAATCCTGGAGCACATGGTGGATACTGTG
TTGCAGTTTGAGGGCGACCGGCACCTGAGTTACCGCATCCTACGCACCACCAAAAACCGCTTTGGCTCTACCTCTGAGCT
GGGCATCTACGAGATGCAGGGCGCCGGGCTACGGCAGGTGAGCAACCCCTCGGAAATTCTGCTTTCCCAGCGCCACGGCG
AGGAGTTGAGCGGCATGGCCATTGGGGCTACCCTGGAAGGCAACCGCCCGCTGCTGGTAGAGGTGCAAGCCCTTGTGACG
CCCGCCACCTATGGCACGCCCCAGCGCTCGGCCACGGGTTTCGACAGCAAGCGCTTGCAAATGCTGCTGGCCGTGTTGGA
AAAGCGCTCAGGCCTGCGCCTGGGTCAGCACGATGTGTTTCTAAACATTGCCGGCGGTCTGCGCCTCGACGACCCCGCCC
TGGACTTGGCCGTGTGCGCCGCCGTGGTCAGCTCCCTCAACGACATTCCGATTCGAGGGGAGGTATGCCTGGCCGCCGAG
GTAGGACTAAGCGGTGAAATCCGGGCCGTGAGCCGGCTCGATCAGCGCTTGGGTGAAGCTGAGAAGCTGGGCTTTGCTGA
AATGTACATTTCCCAGTTCAACGCCCGCGGCCTGGATTTGGCCCGTTACGGCATTCGGGTGCAGCCTGCTGGCCGCCTCG
ATGAGGTGCTGAGTGGTCTGTTTGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.647

100

0.509
  radA Streptococcus pneumoniae Rx1

49.892

100

0.5
  radA Streptococcus pneumoniae D39

49.892

100

0.5
  radA Streptococcus pneumoniae R6

49.892

100

0.5
  radA Streptococcus pneumoniae TIGR4

49.892

100

0.5
  radA Streptococcus mitis NCTC 12261

49.676

100

0.498
  radA Streptococcus mitis SK321

49.676

100

0.498

Multiple sequence alignment