Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPPC_RS00215 Genome accession   NC_014555
Coordinates   37384..38520 (+) Length   378 a.a.
NCBI ID   WP_001045861.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32384..43520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS00180 (HPPC_00160) panD 32831..33181 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  HPPC_RS00185 (HPPC_00165) - 33192..33485 (+) 294 WP_000347166.1 YbaB/EbfC family nucleoid-associated protein -
  HPPC_RS00190 (HPPC_00170) - 33485..34492 (+) 1008 WP_000468452.1 PDZ domain-containing protein -
  HPPC_RS00195 (HPPC_00175) comB6 34498..35553 (+) 1056 WP_000786686.1 P-type conjugative transfer protein TrbL Machinery gene
  HPPC_RS00200 (HPPC_00180) comB7 35570..35683 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HPPC_RS00205 (HPPC_00185) comB8 35680..36423 (+) 744 WP_000660501.1 type IV secretion system protein Machinery gene
  HPPC_RS00210 (HPPC_00190) comB9 36423..37391 (+) 969 WP_013356092.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPPC_RS00215 (HPPC_00195) comB10 37384..38520 (+) 1137 WP_001045861.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPPC_RS00220 (HPPC_00200) - 38591..40003 (+) 1413 WP_000694802.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPPC_RS00225 (HPPC_00205) gmd 40018..41163 (+) 1146 WP_000660060.1 GDP-mannose 4,6-dehydratase -
  HPPC_RS00230 (HPPC_00210) - 41156..42088 (+) 933 WP_001002452.1 GDP-L-fucose synthase family protein -
  HPPC_RS00235 (HPPC_00215) hypE 42383..43381 (-) 999 WP_000378783.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42234.87 Da        Isoelectric Point: 9.9225

>NTDB_id=38559 HPPC_RS00215 WP_001045861.1 37384..38520(+) (comB10) [Helicobacter pylori PeCan4]
MNKWLKGALVFAGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQNPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=38559 HPPC_RS00215 WP_001045861.1 37384..38520(+) (comB10) [Helicobacter pylori PeCan4]
ATGAATAAGTGGCTTAAGGGAGCACTTGTTTTTGCAGGGGGTTTTGCAACAATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
ACCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCAGCTTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.767

100

0.958

Multiple sequence alignment