Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0365_RS05955 Genome accession   NZ_CP043633
Coordinates   1333837..1335207 (-) Length   456 a.a.
NCBI ID   WP_169932855.1    Uniprot ID   A0A7L5FFZ7
Organism   Nonlabens sp. Ci31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328837..1340207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0365_RS05930 (F0365_05905) - 1330287..1331306 (+) 1020 WP_169932850.1 hypothetical protein -
  F0365_RS05935 (F0365_05910) - 1331296..1332084 (+) 789 WP_169932851.1 hypothetical protein -
  F0365_RS05940 (F0365_05915) - 1332135..1332467 (+) 333 WP_169932852.1 hypothetical protein -
  F0365_RS05945 (F0365_05920) - 1332535..1332891 (+) 357 WP_169932853.1 hypothetical protein -
  F0365_RS05950 (F0365_05925) - 1332981..1333514 (-) 534 WP_169932854.1 TlpA family protein disulfide reductase -
  F0365_RS05955 (F0365_05930) radA 1333837..1335207 (-) 1371 WP_169932855.1 DNA repair protein RadA Machinery gene
  F0365_RS05960 (F0365_05935) - 1335208..1336383 (-) 1176 WP_169932856.1 alpha/beta hydrolase -
  F0365_RS05965 (F0365_05940) - 1336414..1337397 (-) 984 WP_169932857.1 YbhN family protein -
  F0365_RS05970 (F0365_05945) panD 1337401..1337751 (-) 351 WP_169932858.1 aspartate 1-decarboxylase -
  F0365_RS05975 (F0365_05950) - 1338699..1339154 (+) 456 WP_169932859.1 hypothetical protein -
  F0365_RS05980 (F0365_05955) - 1339158..1339601 (+) 444 WP_169932860.1 hypothetical protein -
  F0365_RS05985 (F0365_05960) - 1339603..1339950 (+) 348 WP_169932861.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50263.79 Da        Isoelectric Point: 7.1110

>NTDB_id=385562 F0365_RS05955 WP_169932855.1 1333837..1335207(-) (radA) [Nonlabens sp. Ci31]
MAKVKTTWFCQNCGAQHSKWQGQCSTCKEWNTLVEEIVQKETKKSWESNVVDVPLSRKRAPQPQLISKIDAAESPRMDTT
NAEFNRVLGGGLVPGSITLLGGEPGIGKSTLLLQVCLNLPYKTLYVSGEESAQQIKMRADRIKNEAVNCYILTETKTQNI
FRQITEVEPDVLIIDSIQTLQTDHIESSPGSVSQIRECTSELIKFAKETNTPVLLIGHITKDGNIAGPKILEHMVDTVLQ
FEGDRNHTYRILRALKNRFGSTHEIGIYEMLGHGLREVVNPSEILISQRGATLSGTAIAATMEGMRPLMIEVQALVSTAV
YGTPQRSATGYNLKRLNMILAVLEKRAGFKLGQKDVFLNITGGITVDDPAIDLAVVAAILSSNFDIELSSQHCFSAEVGL
GGEIRPVSRMEQRVNEVAKLGFEKVFIAPGKQSFKNVGTEVQAFSKIEDLVRYLFA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=385562 F0365_RS05955 WP_169932855.1 1333837..1335207(-) (radA) [Nonlabens sp. Ci31]
ATGGCCAAAGTAAAAACGACTTGGTTTTGCCAAAATTGTGGCGCCCAACATTCTAAGTGGCAAGGACAGTGTTCGACCTG
TAAAGAATGGAACACTCTGGTGGAAGAGATCGTTCAAAAAGAAACTAAAAAATCTTGGGAAAGTAATGTTGTAGATGTTC
CGCTTTCGCGAAAGCGAGCCCCTCAGCCACAATTGATTTCCAAAATTGATGCCGCCGAAAGTCCTAGAATGGACACTACA
AATGCAGAATTTAATAGAGTTCTAGGTGGTGGATTAGTCCCTGGATCGATCACCCTTCTAGGTGGAGAACCTGGGATAGG
AAAATCCACTTTATTGCTACAAGTATGTCTCAATTTGCCCTACAAAACACTTTATGTATCTGGAGAAGAAAGTGCGCAGC
AAATCAAAATGCGTGCTGACCGTATTAAAAATGAAGCAGTGAACTGCTATATTCTTACCGAAACCAAGACGCAAAATATC
TTTAGACAAATCACTGAAGTAGAGCCAGATGTATTGATTATTGACTCTATTCAAACTCTACAAACAGATCATATTGAAAG
TTCTCCAGGTAGTGTTTCACAAATTAGAGAATGTACCAGTGAACTCATCAAATTTGCTAAAGAAACCAACACACCCGTAC
TTCTAATAGGTCATATTACCAAAGACGGAAATATTGCTGGACCAAAAATTTTGGAACACATGGTGGATACGGTGCTTCAA
TTTGAAGGAGATCGCAATCATACGTATAGGATTTTGAGAGCCCTAAAGAATCGTTTTGGAAGCACCCATGAAATAGGTAT
TTATGAAATGCTCGGTCACGGACTTAGAGAAGTAGTCAACCCTAGTGAAATTTTAATCTCACAACGTGGCGCTACCTTAA
GTGGTACGGCAATCGCCGCTACCATGGAAGGAATGCGACCACTTATGATAGAAGTGCAAGCATTAGTGAGTACGGCAGTT
TATGGAACTCCTCAACGCAGTGCGACTGGTTACAATTTGAAGAGATTAAATATGATTCTTGCGGTTCTTGAAAAAAGGGC
CGGTTTTAAATTAGGTCAAAAAGATGTTTTTCTCAATATTACAGGAGGAATCACTGTGGATGATCCAGCTATAGACCTTG
CCGTAGTAGCTGCTATTCTTTCTTCTAATTTTGACATAGAGCTATCTTCACAACACTGCTTCAGTGCAGAAGTAGGTTTA
GGAGGAGAAATAAGACCAGTAAGCCGCATGGAACAACGTGTGAATGAGGTCGCAAAACTAGGTTTTGAAAAAGTGTTTAT
CGCTCCAGGAAAACAAAGTTTTAAAAATGTAGGAACAGAAGTGCAAGCCTTCTCAAAAATTGAAGATTTAGTGAGGTATT
TGTTTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-223)

Subunit ChlI of Mg-chelatase (ChlI)

(339-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5FFZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.043

100

0.485
  radA Streptococcus pneumoniae Rx1

48.043

100

0.485
  radA Streptococcus pneumoniae D39

48.043

100

0.485
  radA Streptococcus mitis SK321

48.043

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.043

100

0.485
  radA Streptococcus mitis NCTC 12261

48.043

100

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

50.93

94.298

0.48

Multiple sequence alignment