Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F1C79_RS19980 Genome accession   NZ_CP043626
Coordinates   4320674..4322053 (-) Length   459 a.a.
NCBI ID   WP_081520071.1    Uniprot ID   -
Organism   Pseudomonas denitrificans (nom. rej.) strain BG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4315674..4327053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1C79_RS19955 (F1C79_19960) yjiA 4315988..4316986 (-) 999 WP_151188398.1 GTPase -
  F1C79_RS19960 (F1C79_19965) - 4317080..4317283 (-) 204 WP_015478970.1 YbdD/YjiX family protein -
  F1C79_RS19965 (F1C79_19970) - 4317296..4319362 (-) 2067 WP_081520074.1 carbon starvation CstA family protein -
  F1C79_RS19970 (F1C79_19975) - 4319548..4320057 (-) 510 WP_081520073.1 DUF3015 domain-containing protein -
  F1C79_RS19975 (F1C79_19980) - 4320237..4320605 (+) 369 WP_081520072.1 PilZ domain-containing protein -
  F1C79_RS19980 (F1C79_19985) radA 4320674..4322053 (-) 1380 WP_081520071.1 DNA repair protein RadA Machinery gene
  F1C79_RS19985 (F1C79_19990) - 4322254..4322496 (-) 243 WP_081520070.1 hypothetical protein -
  F1C79_RS19990 (F1C79_19995) - 4322573..4322815 (-) 243 WP_081520069.1 YdcH family protein -
  F1C79_RS19995 (F1C79_20000) mscL 4322998..4323414 (+) 417 WP_045216609.1 large-conductance mechanosensitive channel protein MscL -
  F1C79_RS20000 (F1C79_20005) - 4323451..4325001 (-) 1551 WP_151188399.1 TerC family protein -
  F1C79_RS20005 (F1C79_20010) - 4325231..4326007 (-) 777 WP_151188400.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49073.46 Da        Isoelectric Point: 7.0795

>NTDB_id=385535 F1C79_RS19980 WP_081520071.1 4320674..4322053(-) (radA) [Pseudomonas denitrificans (nom. rej.) strain BG1]
MAKAKRMYGCTECGATYPKWAGQCPDCGAWNTLVETVIDTTPTGGSASSSSGRGGWAGQQANIKTLAEVSVEEMPRFSTA
SAELDRALGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRLPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIE
TIIATARQEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTV
LYFEGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDT
SHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLDHQLLVFGEV
GLSGEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=385535 F1C79_RS19980 WP_081520071.1 4320674..4322053(-) (radA) [Pseudomonas denitrificans (nom. rej.) strain BG1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTACCCGAAATGGGCCGGTCAATGCCCTGATTG
CGGCGCCTGGAACACGCTGGTCGAAACCGTCATCGACACCACCCCCACCGGCGGCTCGGCCAGCAGCTCCTCCGGCCGTG
GCGGCTGGGCCGGCCAGCAGGCCAACATCAAGACCCTCGCCGAAGTCAGCGTCGAGGAAATGCCGCGCTTCTCCACCGCC
TCGGCGGAGCTGGACCGCGCCCTGGGCGGCGGCCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGG
CAAGTCCACCATCCTCCTGCAGACCCTCTGCAACATCGCGACGCGCCTGCCGGCGCTCTATGTCACGGGTGAGGAATCCC
AGCAGCAGGTCGCCATGCGCGCCCGCCGCCTGGGCCTGCCCGAGGACAAGCTCAAGGTCATGACCGAGACCTGTATCGAG
ACCATCATCGCCACGGCGCGCCAGGAGCAGCCCAAGGTAATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCT
GCAATCCGCACCCGGCGGCGTCGCTCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGTTTCGCCAAGCAGAGCGGCACGG
CGATCTTCCTGGTCGGCCACGTCACCAAGGAAGGCTCCCTGGCCGGCCCGCGTGTGCTGGAGCACATGGTCGACACCGTG
CTGTATTTCGAGGGTGAATCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAGCT
GGGCGTGTTCGCCATGACCGACCGTGGTCTGAAGGAGGTTTCCAACCCGTCGGCCATCTTCCTCACCCGCGCCCAGGAAT
CGGTGCCGGGCAGTGTGGTCATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTGGACACC
AGTCACCTGGCCAACCCGCGCCGCGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCG
CCACGGCGGCATCCCGACCTACGACCAGGATGTGTTCCTCAACGTGGTCGGCGGTGTGAAGGTTCTGGAGACGGCGTCGG
ACCTGGCGCTGATGGCGGCGGTGATGTCCAGTCTGCGCAACCGCCCGCTGGATCACCAGTTGCTGGTGTTCGGCGAGGTC
GGCCTGTCCGGCGAGGTGCGGCCGGTGCCCAGCGGCCAGGAACGTCTGAAGGAAGCGGCCAAGCACGGCTTCAAACGCGC
CATCGTGCCCAAGGGCAATGCGCCGAAGGAGTCGCCGCCCGGCCTGCAGGTGATCGCCGTGACGCGCCTGGAGCAGGCGC
TGGATGCGTTGTTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

99.346

0.488
  radA Streptococcus mitis SK321

46.187

100

0.462
  radA Streptococcus mitis NCTC 12261

45.969

100

0.46
  radA Streptococcus pneumoniae Rx1

45.969

100

0.46
  radA Streptococcus pneumoniae D39

45.969

100

0.46
  radA Streptococcus pneumoniae R6

45.969

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.969

100

0.46

Multiple sequence alignment