Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   F1C79_RS14115 Genome accession   NZ_CP043626
Coordinates   3128121..3129263 (-) Length   380 a.a.
NCBI ID   WP_151187796.1    Uniprot ID   A0A9X7N091
Organism   Pseudomonas denitrificans (nom. rej.) strain BG1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3123121..3134263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1C79_RS14105 (F1C79_14105) - 3123973..3126846 (-) 2874 WP_151187794.1 FimV/HubP family polar landmark protein -
  F1C79_RS14110 (F1C79_14110) - 3127015..3128025 (-) 1011 WP_151187795.1 aspartate-semialdehyde dehydrogenase -
  F1C79_RS14115 (F1C79_14115) fimV 3128121..3129263 (-) 1143 WP_151187796.1 FimV/HubP family polar landmark protein Machinery gene
  F1C79_RS14120 (F1C79_14120) asd 3129572..3130684 (-) 1113 WP_045211887.1 aspartate-semialdehyde dehydrogenase -
  F1C79_RS14125 (F1C79_14125) leuB 3130765..3131847 (-) 1083 WP_151187797.1 3-isopropylmalate dehydrogenase -
  F1C79_RS14130 (F1C79_14130) - 3131952..3132716 (-) 765 WP_151187798.1 class I SAM-dependent methyltransferase -
  F1C79_RS14135 (F1C79_14135) leuD 3132749..3133393 (-) 645 WP_151187799.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40610.75 Da        Isoelectric Point: 8.4690

>NTDB_id=385532 F1C79_RS14115 WP_151187796.1 3128121..3129263(-) (fimV) [Pseudomonas denitrificans (nom. rej.) strain BG1]
MPGMAGALELGDISSRAALGQTLSANIDLRGVADLSSEEVVVSLASADDFERLGVDRNVVTSGLKFTPDVGKNGRGVIHV
SSSKPIREPYVNFVLQVVWPQGRLVREFTLLLDPPTYMASPVTPPAIAPVAAVRAPQAQPMVPAVANAPADSYRIQRNDA
LWDIASRNRPSSSVSVMQTMAAIQRMNPNAFVDGNVNRIKVGQVLRLPSEQQVREQSHAQAVAHVETQNSEWKARRNPQL
AQQGRQLDATHKAEAGSAPAKAEERDNLRLISGQPGKDKDKGKVEAEQLAVAQEGLDSARREGDELRSRISDLEGQTQKL
NKLIELKDSQIAGLIARLAEQDRAKTQAAPQAGNPQAAAGGVAQVTAPLTAQATDGAPRP

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=385532 F1C79_RS14115 WP_151187796.1 3128121..3129263(-) (fimV) [Pseudomonas denitrificans (nom. rej.) strain BG1]
ATGCCGGGCATGGCAGGCGCCCTGGAACTGGGTGACATCTCCTCGCGGGCAGCGCTGGGGCAGACCCTCTCGGCCAATAT
CGACCTGCGCGGCGTGGCTGACCTGAGCTCCGAGGAGGTGGTGGTGAGTCTTGCCTCGGCAGATGACTTCGAGCGCCTGG
GTGTGGACCGCAACGTGGTCACCAGCGGGCTGAAGTTCACGCCCGACGTCGGCAAGAACGGCCGTGGCGTCATTCATGTC
AGCTCGTCCAAGCCGATTCGCGAGCCCTACGTGAACTTCGTCCTGCAGGTGGTCTGGCCGCAGGGTCGTCTGGTGCGCGA
ATTCACCTTGCTGCTGGACCCACCGACCTATATGGCCAGTCCGGTGACGCCGCCGGCCATCGCGCCGGTGGCTGCAGTTC
GCGCGCCGCAGGCGCAACCAATGGTGCCGGCGGTCGCCAATGCGCCGGCCGACAGCTATCGCATCCAGCGCAACGACGCG
CTGTGGGACATCGCTTCGCGCAACCGTCCGTCCAGCAGTGTTTCGGTCATGCAGACCATGGCCGCGATCCAGCGCATGAA
CCCGAATGCCTTCGTCGACGGCAACGTCAATCGCATCAAGGTCGGCCAGGTGCTGCGCCTGCCTAGCGAGCAGCAGGTTC
GCGAGCAGAGCCACGCCCAGGCAGTGGCCCATGTCGAAACCCAGAATTCCGAGTGGAAAGCCAGGCGCAATCCGCAACTG
GCCCAGCAGGGGCGCCAGCTGGACGCCACCCACAAGGCGGAGGCGGGCAGCGCGCCGGCAAAGGCCGAAGAGCGCGACAA
CCTGCGCCTGATCTCCGGCCAGCCAGGCAAGGACAAGGACAAGGGCAAGGTCGAGGCCGAGCAACTGGCCGTGGCCCAGG
AAGGTCTGGACAGCGCCCGTCGCGAGGGCGATGAACTGCGCAGCCGGATTTCCGACCTGGAGGGCCAGACCCAGAAGCTG
AACAAGCTGATCGAGCTGAAGGACTCGCAGATCGCCGGCCTGATTGCGCGTCTGGCCGAGCAGGATCGCGCCAAGACCCA
GGCCGCTCCGCAGGCAGGCAATCCGCAGGCTGCAGCCGGGGGCGTCGCCCAGGTGACGGCGCCGCTGACCGCCCAGGCTA
CGGACGGTGCGCCGCGCCCCTGA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

50

97.368

0.487

Multiple sequence alignment