Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0Y79_RS12185 Genome accession   NZ_CP043615
Coordinates   2438428..2439801 (-) Length   457 a.a.
NCBI ID   WP_013728271.1    Uniprot ID   J9W221
Organism   Lentilactobacillus buchneri strain MGB0786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2433428..2444801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Y79_RS12170 - 2434420..2435445 (-) 1026 WP_149315806.1 IS30 family transposase -
  F0Y79_RS12175 gltX 2435653..2437146 (-) 1494 WP_149315807.1 glutamate--tRNA ligase -
  F0Y79_RS12180 - 2437235..2438401 (-) 1167 WP_013728270.1 PIN/TRAM domain-containing protein -
  F0Y79_RS12185 radA 2438428..2439801 (-) 1374 WP_013728271.1 DNA repair protein RadA Machinery gene
  F0Y79_RS12190 - 2439896..2440435 (-) 540 WP_013728272.1 dUTP diphosphatase -
  F0Y79_RS12195 rpiA 2440580..2441263 (+) 684 WP_149315506.1 ribose-5-phosphate isomerase RpiA -
  F0Y79_RS12200 - 2441404..2442738 (+) 1335 WP_013728274.1 C1 family peptidase -
  F0Y79_RS12205 - 2442821..2443492 (-) 672 WP_013728275.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  F0Y79_RS12210 - 2443620..2444564 (-) 945 WP_149315808.1 AEC family transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49670.13 Da        Isoelectric Point: 8.0330

>NTDB_id=385503 F0Y79_RS12185 WP_013728271.1 2438428..2439801(-) (radA) [Lentilactobacillus buchneri strain MGB0786]
MAKVKTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETITPKNSTMATQSLRRNGIHDNKPESINKVEFHKDIRFKTDMEE
LNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVSGQLSKSGKILYVSGEESASQIKMRADRLGVNGENLYVYPETDMDVIK
DTINEMKPDAVVIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHSYRILRTVKNRFGSTNELGVFEMRTDGLREVKNPSEIFLEERLKDATGSAIVVSMEGTRPILVEIQALVTASVF
GNAQRTATGLDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLT
GEVRRVTRIEQRVAEAQKLGFKRVLVPANNLQGWNPPTGISVVGVSTLAQALKLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=385503 F0Y79_RS12185 WP_013728271.1 2438428..2439801(-) (radA) [Lentilactobacillus buchneri strain MGB0786]
TTGGCAAAAGTTAAAACCCAATTTGTATGTCAAAACTGCGGCTACATTTCCCCAAGATATTTGGGACGTTGCCCGAACTG
TAATGAATGGAACACCTTGGTTGAAGAAACCATCACCCCCAAAAATAGCACAATGGCAACCCAAAGCCTTCGCAGAAACG
GTATCCATGACAATAAGCCGGAATCAATTAATAAAGTTGAGTTTCATAAGGATATCCGCTTTAAAACCGACATGGAAGAA
CTTAACCGGGTCCTCGGCGGGGGCGTGGTTCCAGGATCGCTGATCTTAATTGGCGGAGACCCCGGCATTGGTAAATCAAC
TTTGATGCTGCAAGTTTCCGGTCAGCTCAGTAAATCCGGTAAGATTTTGTACGTTTCAGGTGAAGAGAGTGCCTCCCAAA
TCAAAATGCGGGCTGATCGGCTTGGTGTCAATGGGGAAAATCTTTATGTCTACCCCGAAACCGATATGGATGTCATCAAA
GATACCATTAACGAGATGAAGCCAGATGCAGTGGTCATCGACTCCGTTCAAACCATGCAGATTCCAGAGCTGCAGTCAGC
AACTGGATCGGTGGCACAGATTCGAGAAGTGACCGCTGATTTAATGAACATTGCCAAAGGTCAGGGAATCACTGTATTCG
TTGTTGGCCACGTGACAAAAGGCGGTGCGATTGCCGGGCCGAAGATTTTGGAGCACATGGTCGACACCGTGTTGTATTTC
GAAGGTGACCTGCACCATTCTTACCGGATTTTGCGGACTGTCAAAAACCGTTTTGGCTCGACGAATGAACTGGGCGTTTT
TGAAATGCGGACTGACGGTCTGAGGGAGGTTAAGAATCCTTCAGAAATCTTCTTGGAAGAACGGCTGAAAGACGCTACCG
GATCGGCCATTGTTGTTTCCATGGAGGGAACCAGACCAATCCTGGTTGAAATTCAGGCTCTGGTAACGGCCTCGGTTTTC
GGTAATGCGCAACGAACTGCCACTGGGCTGGACCGCAATCGGGTGTCGTTGATTATGGCCGTTTTGGAAAAGCGGGCGGG
ATTGATGCTGCAGAATCAGGATGCCTACTTAAAGGCTGCCGGGGGCGTTAAACTGGATGAGCCGGCCATTGATTTGGCAA
TTGCGGTCAGCATCGCTTCATCTTACAAAAACCGCGGCACCAGCCCGACGGAGTGTTATGTCGGCGAACTTGGGCTAACC
GGTGAAGTTCGCCGCGTTACCCGAATTGAGCAGCGGGTTGCTGAGGCCCAAAAACTCGGTTTCAAACGGGTCTTGGTTCC
AGCCAACAATCTTCAGGGCTGGAATCCACCGACTGGCATTTCGGTAGTTGGGGTTTCAACCCTTGCTCAAGCTTTAAAGC
TTGCACTTGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J9W221

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

63.124

100

0.637
  radA Streptococcus mitis NCTC 12261

63.956

99.562

0.637
  radA Streptococcus mitis SK321

63.956

99.562

0.637
  radA Streptococcus pneumoniae Rx1

63.736

99.562

0.635
  radA Streptococcus pneumoniae D39

63.736

99.562

0.635
  radA Streptococcus pneumoniae R6

63.736

99.562

0.635
  radA Streptococcus pneumoniae TIGR4

63.736

99.562

0.635

Multiple sequence alignment