Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   F0Y79_RS08095 Genome accession   NZ_CP043615
Coordinates   1643684..1645495 (+) Length   603 a.a.
NCBI ID   WP_149315691.1    Uniprot ID   -
Organism   Lentilactobacillus buchneri strain MGB0786     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638684..1650495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Y79_RS08075 - 1638729..1639421 (+) 693 WP_013727493.1 response regulator transcription factor -
  F0Y79_RS08080 - 1639418..1640728 (+) 1311 WP_013727494.1 sensor histidine kinase -
  F0Y79_RS08085 - 1640816..1642354 (-) 1539 WP_013727495.1 gamma-glutamylcysteine synthetase -
  F0Y79_RS08090 - 1642510..1643649 (+) 1140 WP_013727496.1 competence protein CoiA -
  F0Y79_RS08095 pepF 1643684..1645495 (+) 1812 WP_149315691.1 oligoendopeptidase F Regulator
  F0Y79_RS08100 - 1645569..1646189 (-) 621 WP_013727498.1 DsbA family protein -
  F0Y79_RS08105 - 1646404..1647057 (+) 654 WP_013727499.1 GTP pyrophosphokinase family protein -
  F0Y79_RS08110 - 1647035..1647847 (+) 813 WP_013727500.1 NAD kinase -
  F0Y79_RS08115 - 1647840..1648730 (+) 891 WP_013727501.1 RluA family pseudouridine synthase -
  F0Y79_RS08120 - 1648841..1649689 (+) 849 WP_013727502.1 methyltransferase domain-containing protein -
  F0Y79_RS08125 - 1649707..1650219 (+) 513 WP_013727503.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69729.90 Da        Isoelectric Point: 4.9685

>NTDB_id=385489 F0Y79_RS08095 WP_149315691.1 1643684..1645495(+) (pepF) [Lentilactobacillus buchneri strain MGB0786]
MPKPQELPLRKDVPEELTWDLTTIYPTDQEFETDYEAVQTGAKQFAELAGTIEKSAAALLTATERLMTLSRKLEKVYVYA
QLKNDQDTSEDKYQAMYSRAESLGAQFGAATAWFEPELLKVSDDQIKQFYQDQPKLADYRRFFDQTFKRRNHILSNDVEA
VLAGAGDIFSSGEKTFGILDNTDLSFPAVTDENGNQVKLSQGVYGILLESTKQSVRKEAFEKLYQVYRQFQHTLAATLTT
NVKNHNFKANIRHYNNALEAALADNEVPTDVYNNLIKVVNEHLDLLHRYVALRKKILGLDELHMYDMYTSLVGKKSPKYT
FEQSKQIALEALQVMGPDYVSHVKEEFNNRWIDVVENQFKRSGGYSSGTYDTNPYILLNWKDNLDNLYTLIHETGHSMHS
YYSHHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKFKDDDEMKKFILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAKG
QPLTANFMDDYYRNLNQKYYVDAVISDPQIGLEWSRIPHFYYNFYVYQYSTGFAAASTLADGIVNGGQANVDKYLNYLKS
GSSDTPTNVMKKAGVDMTQPEYLEKAFQIFEQRLDEFERLYNK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=385489 F0Y79_RS08095 WP_149315691.1 1643684..1645495(+) (pepF) [Lentilactobacillus buchneri strain MGB0786]
ATGCCAAAACCACAAGAATTACCGCTTAGAAAAGATGTTCCAGAAGAACTGACTTGGGATCTGACGACGATTTATCCAAC
CGATCAGGAATTTGAAACTGACTATGAAGCTGTTCAAACCGGTGCCAAACAATTCGCTGAATTAGCCGGAACCATTGAGA
AGAGCGCGGCCGCGCTGCTGACGGCAACTGAGCGTTTGATGACCTTAAGCCGAAAGCTTGAAAAAGTCTATGTCTACGCC
CAGTTGAAAAATGACCAGGATACCAGCGAAGACAAGTATCAGGCCATGTATTCCCGTGCGGAATCCTTGGGGGCTCAGTT
TGGAGCGGCGACTGCCTGGTTTGAACCGGAACTCCTCAAAGTTTCTGACGATCAAATCAAGCAGTTTTATCAGGATCAAC
CCAAACTGGCCGATTATCGACGGTTTTTCGATCAAACCTTTAAACGCCGTAATCATATTTTAAGCAATGATGTTGAAGCC
GTCCTGGCGGGGGCCGGCGATATTTTCTCGTCTGGAGAGAAAACCTTTGGCATTTTGGATAACACTGATCTTTCATTCCC
AGCAGTGACTGATGAGAATGGCAATCAGGTGAAGTTATCTCAAGGTGTTTATGGTATTTTATTGGAATCGACAAAGCAAA
GTGTGCGTAAAGAAGCGTTTGAAAAATTGTATCAAGTTTATCGTCAGTTCCAGCACACGCTGGCGGCAACACTGACCACT
AATGTCAAGAATCACAATTTCAAAGCCAACATCCGCCACTATAACAATGCTTTGGAGGCCGCTTTGGCTGATAACGAGGT
GCCGACAGACGTTTATAATAACCTGATCAAAGTGGTCAACGAGCACCTCGACCTGCTGCACAGGTACGTTGCTTTGCGTA
AAAAGATTCTGGGCCTTGATGAACTGCATATGTACGATATGTATACGTCCCTAGTTGGTAAAAAATCACCCAAGTATACG
TTTGAACAGTCCAAGCAAATCGCTTTGGAAGCTTTGCAGGTAATGGGGCCGGATTATGTCAGCCACGTTAAAGAGGAGTT
CAACAACCGTTGGATTGACGTTGTTGAAAATCAATTCAAAAGAAGCGGCGGCTATTCCTCAGGGACTTACGATACCAATC
CGTATATTTTACTGAATTGGAAGGATAATTTGGATAATCTCTACACGTTGATCCACGAAACCGGTCATAGTATGCACAGC
TACTATTCCCATCATAACCAGCCTTATCAGTATGGTGATTACTCCATTTTTGTCGCTGAAATTGCGTCCACGACCAACGA
GAACATCTTGACGGATTATCTCTTGAATAAATTTAAAGATGATGATGAAATGAAGAAATTTATTTTAAATTACTATCTGG
ATGGATTTAAGGGAACGGTTTTCCGCCAAACTCAGTTTGCTGAATTTGAACAATACATTCATGAACAGGATGCAAAAGGT
CAACCATTAACCGCCAACTTTATGGATGATTACTATCGCAATTTAAATCAAAAATACTATGTTGATGCCGTGATTTCTGA
CCCTCAGATTGGCCTTGAATGGTCACGGATTCCACATTTCTATTACAACTTCTACGTTTATCAATATTCCACCGGCTTTG
CTGCCGCATCGACATTGGCTGATGGCATTGTGAACGGCGGCCAGGCCAACGTTGATAAATATTTGAACTACCTCAAATCA
GGCAGTTCGGACACGCCAACCAACGTCATGAAAAAAGCCGGCGTTGACATGACGCAACCGGAATATCTTGAGAAGGCCTT
CCAGATTTTTGAGCAGCGTCTGGATGAATTTGAGCGTTTGTACAACAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-588)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.03

98.507

0.522

Multiple sequence alignment