Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG574_RS05750 Genome accession   NZ_CP051541
Coordinates   1227218..1228267 (+) Length   349 a.a.
NCBI ID   WP_202144626.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222218..1233267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS05730 (HG574_05720) - 1223166..1224389 (-) 1224 Protein_1129 DUF874 family protein -
  HG574_RS05740 (HG574_05730) asd 1224803..1225841 (-) 1039 Protein_1130 aspartate-semialdehyde dehydrogenase -
  HG574_RS05745 (HG574_05735) hisS 1225828..1227156 (-) 1329 WP_202144625.1 histidine--tRNA ligase -
  HG574_RS05750 (HG574_05740) waaF 1227218..1228267 (+) 1050 WP_202144626.1 lipopolysaccharide heptosyltransferase II Regulator
  HG574_RS05755 (HG574_05745) - 1228449..1228829 (-) 381 WP_202144627.1 flagellar protein -
  HG574_RS05760 (HG574_05750) - 1229047..1230036 (+) 990 WP_202144628.1 aldo/keto reductase -
  HG574_RS05765 (HG574_05755) fusA 1230568..1232646 (-) 2079 WP_000101816.1 elongation factor G -
  HG574_RS05770 (HG574_05760) rpsG 1232658..1233125 (-) 468 WP_001254355.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39448.11 Da        Isoelectric Point: 9.6680

>NTDB_id=385486 HG574_RS05750 WP_202144626.1 1227218..1228267(+) (waaF) [Helicobacter pylori strain LIM-001]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFVLVGPQITCELFKKDEKIEAVFTDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLEKKLDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPNASYGSAKRWLASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLQAAHILLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385486 HG574_RS05750 WP_202144626.1 1227218..1228267(+) (waaF) [Helicobacter pylori strain LIM-001]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTGTCTTAGTAGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGCTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAAAATTGGATCAAAAAAGCGTTTTGCCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAACGCAAGCTATGGGAG
CGCTAAAAGATGGCTAGCTTCTTATTACGCTGAAGTCGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATTGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCGCTAGCACGAAAACCCCCTTAATCGCTCTTTTTGGTCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
CTAAAAAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACATTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

36.842

97.994

0.361