Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0T65_RS08095 Genome accession   NZ_CP043612
Coordinates   1899919..1901280 (-) Length   453 a.a.
NCBI ID   WP_111377621.1    Uniprot ID   -
Organism   Flavobacterium nitrogenifigens strain KACC 18538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894919..1906280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T65_RS08080 - 1895260..1896204 (+) 945 WP_111377624.1 OmpA family protein -
  F0T65_RS08085 - 1896463..1897500 (+) 1038 WP_111377623.1 aldo/keto reductase -
  F0T65_RS08090 - 1897789..1899753 (-) 1965 WP_111377622.1 transglycosylase domain-containing protein -
  F0T65_RS08095 radA 1899919..1901280 (-) 1362 WP_111377621.1 DNA repair protein RadA Machinery gene
  F0T65_RS08100 - 1901280..1902434 (-) 1155 WP_111377620.1 alpha/beta hydrolase -
  F0T65_RS08105 panD 1902638..1902988 (-) 351 WP_008465481.1 aspartate 1-decarboxylase -
  F0T65_RS08110 panC 1903003..1903851 (-) 849 WP_111377619.1 pantoate--beta-alanine ligase -
  F0T65_RS08115 - 1903958..1904764 (+) 807 WP_111377618.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49738.13 Da        Isoelectric Point: 6.0975

>NTDB_id=385475 F0T65_RS08095 WP_111377621.1 1899919..1901280(-) (radA) [Flavobacterium nitrogenifigens strain KACC 18538]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQDKVAWKSEPTPTSKAPKPLKINEIDSTQEVRMDTTDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQVSLKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQI
ETIQPEVVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKESNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFDTIFVSKYNKIALKNTGIKIELVAKIEDVASILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=385475 F0T65_RS08095 WP_111377621.1 1899919..1901280(-) (radA) [Flavobacterium nitrogenifigens strain KACC 18538]
ATGTCAAAAGTTAAAACTTCCTTTTTCTGCCAAAACTGCGGAACCCAATATGCCAAATGGCAAGGGCAATGCAACGCATG
CAAAGAATGGAATACGATTGCCGAAGAAATTATCCAGAAACAGGATAAAGTGGCTTGGAAAAGCGAACCTACTCCAACAA
GCAAAGCACCAAAACCTTTAAAAATTAACGAGATCGATTCTACCCAGGAGGTCCGAATGGACACTACCGATGGCGAATTG
AATCGTGTTTTGGGTGGCGGACTTGTCCCTGGATCTTTAACGCTTTTAGGCGGTGAACCCGGCATCGGAAAAAGTACACT
TTTACTTCAAGTTTCTCTAAAACTACCTTATAAAACTTTATATGTTTCTGGAGAAGAAAGTCAGAAACAGATCAAAATGC
GTGCGGAAAGAATTACGCCAAATAGCGATAACTGCTATATTCTTACCGAAACCAAAACGCAAAATATTTTTAAACAGATT
GAAACCATTCAGCCTGAAGTAGTCATAATTGACTCCATTCAGACTTTGCATACTGATTATATCGAATCGACCGCAGGAAG
TATTTCCCAAATTCGTGAGACCACTGCAGAATTGATCAAATTTGCCAAAGAAAGCAATATCCCGGTAATATTAATTGGGC
ACATTACCAAAGACGGAAATATCGCAGGACCAAAAATTTTGGAACATATGGTTGACACCGTTCTTCAGTTTGAAGGCGAC
AGAAATCATATTTATAGAATTTTACGTTCACTAAAAAACCGTTTTGGTTCTACTTCTGAACTTGGTATTTACGAAATGCT
CGGAAGCGGATTACGAGAAGTGAGTAATCCTTCTGAAATTCTGATTTCACATAAAGACGAAGAATTATCTGGAACTGCAA
TTGCCACAACTTTAGAAGGCATGCGTCCGTTGATGATCGAAATACAATCTTTGGTCAGCACGGCCGTTTACGGAACGCCA
CAGCGAAGCACAACAGGTTATAACGCCAAAAGGCTAAATATGATTCTAGCTGTTTTAGAAAAAAGAGCTGGATTTCGTTT
AGGCGCAAAAGACGTTTTCTTGAATGTCACGGGAGGAATTTCTGTTGATGATCCAGCAATTGACTTGGCTGTTGTTGCCG
CGATTTTATCTTCTAACGAAGATATTCCAGTTGGAAAAGGATTCTGTTTTGCTGGCGAAGTTGGACTTTCTGGCGAAATT
CGTCCTGTTAATCGAGTGGATCAGCGTATTCAAGAGGCTGAAAAACTAGGTTTCGATACCATTTTTGTTTCCAAATACAA
CAAAATTGCTTTAAAGAATACAGGAATTAAGATTGAACTTGTTGCAAAAATTGAAGATGTTGCAAGTATACTTTTTGGTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.488
  radA Streptococcus mitis SK321

50.82

94.26

0.479
  radA Streptococcus pneumoniae Rx1

50.82

94.26

0.479
  radA Streptococcus pneumoniae D39

50.82

94.26

0.479
  radA Streptococcus pneumoniae R6

50.82

94.26

0.479
  radA Streptococcus pneumoniae TIGR4

50.82

94.26

0.479
  radA Streptococcus mitis NCTC 12261

50.82

94.26

0.479

Multiple sequence alignment