Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   F0T56_RS20835 Genome accession   NZ_CP043611
Coordinates   4550271..4550717 (-) Length   148 a.a.
NCBI ID   WP_276326554.1    Uniprot ID   -
Organism   Paenibacillus antarcticus strain KACC 11469     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4545271..4555717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T56_RS20800 - 4545329..4546738 (-) 1410 WP_068649543.1 ABC transporter substrate-binding protein -
  F0T56_RS20805 - 4546753..4547394 (-) 642 WP_068649647.1 GDSL-type esterase/lipase family protein -
  F0T56_RS20810 - 4547400..4548311 (-) 912 WP_068649546.1 dihydrodipicolinate synthase family protein -
  F0T56_RS20815 - 4548805..4548897 (-) 93 WP_246169257.1 YjcZ family sporulation protein -
  F0T56_RS20820 - 4549048..4549155 (-) 108 WP_084402979.1 sporulation protein YjcZ -
  F0T56_RS20825 - 4549260..4549976 (+) 717 WP_068649548.1 hypothetical protein -
  F0T56_RS20830 - 4550081..4550176 (-) 96 WP_082867609.1 sporulation protein YjcZ -
  F0T56_RS20835 nucA/comI 4550271..4550717 (-) 447 WP_276326554.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F0T56_RS20840 - 4550962..4552044 (+) 1083 WP_068649553.1 AI-2E family transporter -
  F0T56_RS20845 - 4551999..4552703 (-) 705 WP_068649555.1 uracil-DNA glycosylase -
  F0T56_RS20850 - 4552953..4553852 (-) 900 WP_068649558.1 hypothetical protein -
  F0T56_RS20855 - 4553946..4554770 (-) 825 WP_068649560.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16289.25 Da        Isoelectric Point: 4.5678

>NTDB_id=385463 F0T56_RS20835 WP_276326554.1 4550271..4550717(-) (nucA/comI) [Paenibacillus antarcticus strain KACC 11469]
MKKLKRSILSLILVVIVALGAYYFDIDLSGQTDDHMESSTKADYSLVFPTDRYPETATHIQNAIKSGHSAICTIDRAGAE
DNRSESLKGIPTKKGLDRDEWPMAMCAEGGADADIEYISPKDNRGAGSWVGNQLEDYPDGSRVEFIFP

Nucleotide


Download         Length: 447 bp        

>NTDB_id=385463 F0T56_RS20835 WP_276326554.1 4550271..4550717(-) (nucA/comI) [Paenibacillus antarcticus strain KACC 11469]
TTGAAAAAGCTCAAACGATCCATTCTTAGTCTAATTCTGGTAGTGATAGTAGCATTAGGAGCGTATTATTTTGACATTGA
TTTATCTGGCCAGACAGATGATCATATGGAATCTAGTACAAAGGCTGATTATTCGTTAGTATTCCCTACGGATCGTTATC
CAGAAACGGCAACGCATATTCAAAATGCGATCAAAAGCGGACACTCTGCTATTTGTACGATTGATCGAGCAGGAGCTGAG
GATAATCGTAGTGAATCTTTAAAGGGAATTCCAACAAAAAAAGGGTTAGACCGGGATGAGTGGCCGATGGCGATGTGTGC
CGAAGGTGGAGCTGATGCAGATATCGAATACATAAGTCCAAAAGATAACAGGGGAGCAGGAAGCTGGGTTGGGAATCAGC
TTGAGGATTATCCAGATGGAAGTCGAGTTGAATTCATATTTCCCTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(51-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.348

77.703

0.5

Multiple sequence alignment