Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG574_RS00550 Genome accession   NZ_CP051541
Coordinates   113024..113482 (-) Length   152 a.a.
NCBI ID   WP_187936914.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 108024..118482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS00535 (HG574_00535) - 108408..109190 (-) 783 WP_202144891.1 glycosyltransferase family 2 protein -
  HG574_RS00540 (HG574_00540) tlpB 109220..110917 (-) 1698 WP_202144892.1 methyl-accepting chemotaxis protein TlpB -
  HG574_RS00545 (HG574_00545) - 111135..112847 (-) 1713 WP_338154451.1 5'-nucleotidase C-terminal domain-containing protein -
  HG574_RS00550 (HG574_00550) luxS 113024..113482 (-) 459 WP_187936914.1 S-ribosylhomocysteine lyase Regulator
  HG574_RS00555 (HG574_00555) - 113520..114662 (-) 1143 WP_202144894.1 cystathionine gamma-synthase -
  HG574_RS00560 (HG574_00560) - 114683..115600 (-) 918 WP_202144895.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG574_RS00565 (HG574_00565) - 115719..116297 (+) 579 WP_202144896.1 hypothetical protein -
  HG574_RS00570 (HG574_00570) dnaK 116543..118405 (-) 1863 WP_202143032.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17301.71 Da        Isoelectric Point: 6.3750

>NTDB_id=385462 HG574_RS00550 WP_187936914.1 113024..113482(-) (luxS) [Helicobacter pylori strain LIM-001]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLACAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=385462 HG574_RS00550 WP_187936914.1 113024..113482(-) (luxS) [Helicobacter pylori strain LIM-001]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCAAGCC
TGCATTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACAATGCAAGA
TGTGCTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCTA
AGAATTTAGCGTGCGCTTTTTTGGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.857

92.105

0.395