Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F0T56_RS06370 Genome accession   NZ_CP043611
Coordinates   1375113..1376063 (+) Length   316 a.a.
NCBI ID   WP_068647135.1    Uniprot ID   A0A168QAS5
Organism   Paenibacillus antarcticus strain KACC 11469     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370113..1381063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T56_RS06350 - 1371205..1371393 (+) 189 WP_068647131.1 aspartyl-phosphate phosphatase Spo0E family protein -
  F0T56_RS06355 - 1371497..1371628 (-) 132 WP_084402834.1 DUF4023 domain-containing protein -
  F0T56_RS06360 - 1371701..1372639 (-) 939 WP_068647133.1 C40 family peptidase -
  F0T56_RS06365 - 1372765..1374846 (-) 2082 WP_149466275.1 peptidoglycan D,D-transpeptidase FtsI family protein -
  F0T56_RS06370 ceuB 1375113..1376063 (+) 951 WP_068647135.1 ABC transporter permease Machinery gene
  F0T56_RS06375 - 1376063..1377007 (+) 945 WP_068647137.1 iron chelate uptake ABC transporter family permease subunit -
  F0T56_RS06380 - 1377004..1377762 (+) 759 WP_068647139.1 ABC transporter ATP-binding protein -
  F0T56_RS06385 - 1377888..1378886 (+) 999 WP_068647141.1 siderophore ABC transporter substrate-binding protein -
  F0T56_RS06390 - 1378950..1379204 (+) 255 WP_068647143.1 hypothetical protein -
  F0T56_RS06395 - 1379326..1380420 (-) 1095 WP_068647145.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35176.58 Da        Isoelectric Point: 10.2499

>NTDB_id=385450 F0T56_RS06370 WP_068647135.1 1375113..1376063(+) (ceuB) [Paenibacillus antarcticus strain KACC 11469]
MKKRYLLITLVIFSFISIFIGVKDISPMDIFRLTDQQWQTLVISRIPRLISIIIAGMSMSIVGLIMQQLTRNKFVSPTTA
GTMDSARFGILVAMMVFSNATSLQKMLVAFIFALIGTFIFMKILDKVKYKDAIFIPLVGIMFGNVVGSITTFFAYKNDLI
QNMASWLQGDFSVILKGRYEMLYISIPLVIIAYLFANRFTIAGMGEEFAKNLGLNYKQVVNIGLVIVAAVSSIVILTVGM
IPFLGLIVPNIVTIYQGDNLKKSLSHTALLGAVFLLFCDILGRLIIFPYEIPIGLTVGVIGSGIFIYLLIRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=385450 F0T56_RS06370 WP_068647135.1 1375113..1376063(+) (ceuB) [Paenibacillus antarcticus strain KACC 11469]
ATGAAAAAGAGATATTTACTCATTACACTTGTTATTTTTTCATTTATTTCAATCTTCATCGGAGTTAAAGATATCTCTCC
AATGGATATCTTCCGCCTAACAGATCAACAATGGCAAACATTAGTAATAAGTCGAATACCGCGTTTAATAAGCATCATTA
TAGCGGGTATGAGTATGAGTATTGTCGGTTTAATTATGCAGCAGTTGACCCGTAATAAGTTCGTGTCTCCAACGACAGCA
GGTACGATGGATTCAGCGAGATTCGGAATTCTTGTCGCTATGATGGTATTCTCGAATGCAACATCGCTACAGAAAATGTT
GGTAGCATTTATCTTTGCACTTATAGGAACTTTCATCTTTATGAAAATTCTAGACAAGGTGAAATATAAGGATGCCATCT
TTATTCCATTAGTAGGGATTATGTTTGGGAACGTAGTTGGCTCGATTACGACATTTTTTGCCTATAAGAATGATCTCATT
CAGAATATGGCATCATGGTTACAGGGAGATTTCTCAGTGATCTTGAAGGGCCGATATGAAATGTTATATATCAGCATTCC
ACTCGTCATTATAGCGTACCTATTTGCCAATCGATTCACGATTGCGGGTATGGGTGAAGAGTTCGCTAAGAACTTAGGAT
TGAATTATAAGCAAGTCGTAAATATCGGGCTTGTTATTGTAGCAGCAGTGTCTTCTATCGTAATATTAACGGTTGGGATG
ATTCCTTTCTTGGGGCTGATTGTTCCGAATATTGTTACGATTTATCAAGGAGATAATCTAAAAAAGAGTCTTTCACATAC
CGCGCTATTAGGAGCAGTGTTCCTTCTATTCTGTGACATCTTAGGTCGACTCATTATATTTCCTTATGAAATACCGATTG
GTCTCACCGTTGGCGTTATCGGAAGCGGAATCTTTATCTACTTACTTATTAGAAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A168QAS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.633

99.051

0.541

Multiple sequence alignment