Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG575_RS05875 Genome accession   NZ_CP051540
Coordinates   1260555..1261604 (+) Length   349 a.a.
NCBI ID   WP_202247844.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255555..1266604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS05860 (HG575_05860) - 1256119..1257954 (+) 1836 WP_202247838.1 hypothetical protein -
  HG575_RS05865 (HG575_05865) asd 1258138..1259178 (-) 1041 WP_202247840.1 aspartate-semialdehyde dehydrogenase -
  HG575_RS05870 (HG575_05870) hisS 1259165..1260493 (-) 1329 WP_202247842.1 histidine--tRNA ligase -
  HG575_RS05875 (HG575_05875) waaF 1260555..1261604 (+) 1050 WP_202247844.1 lipopolysaccharide heptosyltransferase II Regulator
  HG575_RS05880 (HG575_05880) - 1261740..1262129 (-) 390 WP_202247846.1 flagellar protein -
  HG575_RS05885 (HG575_05885) - 1262347..1263336 (+) 990 WP_202247848.1 aldo/keto reductase -
  HG575_RS05890 (HG575_05890) fusA 1263887..1265965 (-) 2079 WP_202247850.1 elongation factor G -
  HG575_RS05895 (HG575_05895) rpsG 1265977..1266444 (-) 468 WP_001254358.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39443.08 Da        Isoelectric Point: 9.5546

>NTDB_id=385449 HG575_RS05875 WP_202247844.1 1260555..1261604(+) (waaF) [Helicobacter pylori strain LIM-002]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFVLVGPQITCELFKKDEKIEAVFTDNTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAVALLEEGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385449 HG575_RS05875 WP_202247844.1 1260555..1261604(+) (waaF) [Helicobacter pylori strain LIM-002]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTGTCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGCTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGTTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCCGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCGCTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367