Detailed information NTG0385445

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG575_RS04755
• Genome accession: NZ_CP051540
• Coordinates: 1010738..1011937 (+)
• Length: 399 a.a.
• NCBI ID: WP_202247587.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-002
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1005738..1016937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG575_RS04740 (HG575_04740)	-	1007847..1007981 (+)	135	WP_078265615.1	type IV secretion system protein VirB7	-
HG575_RS04745 (HG575_04745)	-	1007974..1009140 (+)	1167	WP_202247583.1	VirB8/TrbF family protein	-
HG575_RS04750 (HG575_04750)	-	1009137..1010741 (+)	1605	WP_202247585.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG575_RS04755 (HG575_04755)	comB10	1010738..1011937 (+)	1200	WP_202247587.1	DNA type IV secretion system protein ComB10	Machinery gene
HG575_RS04760 (HG575_04760)	-	1011921..1014161 (+)	2241	WP_202247589.1	collagen-like protein	-
HG575_RS04765 (HG575_04765)	-	1014174..1015145 (+)	972	WP_202247591.1	hypothetical protein	-
HG575_RS04770 (HG575_04770)	-	1015162..1015437 (+)	276	WP_000883375.1	hypothetical protein	-
HG575_RS04775 (HG575_04775)	-	1015442..1016386 (+)	945	WP_202247593.1	CpaF/VirB11 family protein	-
HG575_RS04780 (HG575_04780)	-	1016383..1016901 (+)	519	WP_000760568.1	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44597.28 Da
• Isoelectric Point: 10.1069

>NTDB_id=385445 HG575_RS04755 WP_202247587.1 1010738..1011937(+) (comB10) [Helicobacter pylori strain LIM-002]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNNLNRQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLIGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEVNNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=385445 HG575_RS04755 WP_202247587.1 1010738..1011937(+) (comB10) [Helicobacter pylori strain LIM-002]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAGGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCCTTAGAGCCAACTAAACCAGCTACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAACGAGCATAAGCTCTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACAATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGTATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
ATTAATAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTATTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCAAAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.401	99.499	0.531