Detailed information NTG0385439

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: F0R78_RS23875
• Genome accession: NZ_CP043610
• Coordinates: 5233103..5234470 (-)
• Length: 455 a.a.
• NCBI ID: WP_005784538.1
• Uniprot ID: A0A015YPZ3
• Organism: Bacteroides fragilis strain GUT04
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5228103..5239470

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0R78_RS23860	-	5230455..5231051 (-)	597	WP_011202071.1	response regulator transcription factor	-
F0R78_RS23865	-	5231059..5232648 (-)	1590	WP_005784534.1	NAD(P)/FAD-dependent oxidoreductase	-
F0R78_RS23870	-	5232689..5233063 (-)	375	WP_009291534.1	GxxExxY protein	-
F0R78_RS23875	radA	5233103..5234470 (-)	1368	WP_005784538.1	DNA repair protein RadA	Machinery gene
F0R78_RS23885	-	5235128..5236177 (-)	1050	WP_009291535.1	asparaginase	-
F0R78_RS23890	thrA	5236671..5239106 (+)	2436	WP_005784545.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50242.96 Da
• Isoelectric Point: 6.3244

>NTDB_id=385439 F0R78_RS23875 WP_005784538.1 5233103..5234470(-) (radA) [Bacteroides fragilis strain GUT04]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKEVPNKRPVSGIESPKAKPVTLSEIEADEEPRIDMHDEELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLHMPERRILYISGEESARQLKLRADRLTRTSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDTKKLRIELVPVRKVEEAFRTLFG

Nucleotide

• Length: 1368 bp

>NTDB_id=385439 F0R78_RS23875 WP_005784538.1 5233103..5234470(-) (radA) [Bacteroides fragilis strain GUT04]
ATGGCAAAAGAGAAAACCGTTTATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGCAAATGTCCTTCGTG
TGGCGAATGGAATACCTATGTAGAAGAGATTGTCCGCAAGGAAGTTCCGAATAAACGTCCGGTATCTGGCATCGAATCGC
CCAAAGCCAAGCCCGTCACCCTGAGCGAGATCGAAGCAGATGAAGAACCCCGCATCGACATGCACGACGAGGAGCTGAAC
CGGGTGCTGGGAGGCGGGCTGGTACCCGGATCGCTGGTACTGATCGGTGGCGAACCCGGCATCGGGAAGTCCACACTGGT
GCTTCAAACCGTGCTCCACATGCCTGAGCGGAGGATACTCTACATCTCGGGAGAAGAGAGCGCAAGGCAACTGAAACTTC
GTGCCGACCGGTTAACCCGAACTTCGAGCGACTGTCTGATTGTCTGCGAAACATCGTTGGAACAGATCTATGTACATATC
AAGAATACACGTCCGGACCTAGTAATCATCGACTCCATACAGACGATATCGACCGAAAGCATCGAATCGTCACCGGGAAG
CATCGCGCAAGTCCGGGAGTGCTCGGCATCCATCCTCCGTTTTGCCAAAGAGACGCATACCCCGGTGTTGCTGATCGGGC
ATATCAACAAAGAAGGCAGCATTGCCGGACCGAAGGTTCTAGAGCACATCGTAGACACCGTACTCCAATTCGAGGGAGAC
CAGCATTATATGTACCGTATCCTGCGCAGCATCAAGAACCGCTTTGGAAGTACCGCTGAATTGGGCATCTATGAGATGCG
TCAAGACGGGCTTCGCCAAGTCAGCAACCCTTCGGAATTGTTACTGTCGCAGGACCACGAAGGCATGAGCGGGGTAGCCA
TCGCATCTGCCATCGAAGGGGTAAGACCCTTCCTGATAGAGACGCAAGCACTTGTCAGCTCTGCGGTTTACGGCAATCCG
CAACGTTCGGCAACGGGATTCGATATTCGCCGCATGAACATGCTGCTGGCCGTATTAGAGAAACGTGTCGGATTTAAGCT
GGCACAAAAAGATGTCTTTCTAAATATTGCCGGAGGACTGAAGGTTAACGACCCTGCCATCGACCTGGCTGTTATCAGTG
CCATCCTTTCATCCAATATGGATGCTGCCATCGAACCTGAGGTTTGCATGGCCGGAGAAATCGGATTATCCGGTGAAATC
CGTCCGGTAAACCGGATCGAACAACGTATCGGTGAAGCTGAGAAGCTCGGGTTCAAACGGTTCATCCTACCTAAATACAA
CATGCAGGGCATCGATACAAAGAAGCTGAGGATAGAACTGGTGCCGGTAAGAAAGGTGGAAGAAGCATTCCGGACGCTCT
TCGGGTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (71-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A015YPZ3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.965	100	0.523
radA	Streptococcus mitis SK321	48.352	100	0.484
radA	Streptococcus mitis NCTC 12261	48.352	100	0.484
radA	Streptococcus pneumoniae Rx1	48.352	100	0.484
radA	Streptococcus pneumoniae D39	48.352	100	0.484
radA	Streptococcus pneumoniae R6	48.352	100	0.484
radA	Streptococcus pneumoniae TIGR4	48.352	100	0.484