Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG575_RS02960 Genome accession   NZ_CP051540
Coordinates   611963..613483 (+) Length   506 a.a.
NCBI ID   WP_202248986.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 606963..618483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS02930 (HG575_02930) moaC 607116..607592 (+) 477 WP_202248978.1 cyclic pyranopterin monophosphate synthase MoaC -
  HG575_RS02935 (HG575_02935) hpaA 607705..608487 (+) 783 WP_202248980.1 flagellar sheath lipoprotein HpaA -
  HG575_RS02940 (HG575_02940) - 608517..609353 (+) 837 WP_202248982.1 outer membrane protein -
  HG575_RS02945 (HG575_02945) tig 609465..610820 (+) 1356 WP_202248984.1 trigger factor -
  HG575_RS02950 (HG575_02950) clpP 610841..611428 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HG575_RS02955 (HG575_02955) def 611433..611957 (+) 525 WP_001185803.1 peptide deformylase -
  HG575_RS02960 (HG575_02960) comM 611963..613483 (+) 1521 WP_202248986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HG575_RS02965 (HG575_02965) - 613508..615568 (+) 2061 WP_202248988.1 heavy metal translocating P-type ATPase -
  HG575_RS02970 (HG575_02970) - 615604..616935 (+) 1332 WP_202248990.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57328.33 Da        Isoelectric Point: 8.3918

>NTDB_id=385436 HG575_RS02960 WP_202248986.1 611963..613483(+) (comM) [Helicobacter pylori strain LIM-002]
MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNHNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=385436 HG575_RS02960 WP_202248986.1 611963..613483(+) (comM) [Helicobacter pylori strain LIM-002]
ATGATTAACACGATATTTTGCACGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCCGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAGCAGAGGGTCCAATCGGCTTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATCTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAATGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAACCATAACATTTTCCCCATGCTTTTAGACATTGCTATTAAGCGCCCCCATGCTAAAG
TCATTGCACCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATTTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGCTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGTATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTAGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGATAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CACAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Acinetobacter baylyi ADP1

36.399

100

0.368