Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HG576_RS06030 Genome accession   NZ_CP051539
Coordinates   1289447..1289992 (-) Length   181 a.a.
NCBI ID   WP_000482424.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1284447..1294992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS06015 (HG576_06010) - 1285592..1285822 (+) 231 WP_000468328.1 YdcH family protein -
  HG576_RS06020 (HG576_06015) - 1286487..1288706 (-) 2220 WP_202138744.1 SabA family sialic acid-binding adhesin -
  HG576_RS06025 (HG576_06020) rpsR 1289167..1289424 (-) 258 WP_000440196.1 30S ribosomal protein S18 -
  HG576_RS06030 (HG576_06025) ssb 1289447..1289992 (-) 546 WP_000482424.1 single-stranded DNA-binding protein Machinery gene
  HG576_RS06035 (HG576_06030) rpsF 1290002..1290430 (-) 429 WP_001216701.1 30S ribosomal protein S6 -
  HG576_RS06040 (HG576_06035) - 1290583..1291605 (-) 1023 WP_097686836.1 DNA polymerase III subunit delta -
  HG576_RS06045 (HG576_06040) - 1291595..1293529 (-) 1935 WP_202138745.1 ribonuclease R family protein -
  HG576_RS06050 (HG576_06045) - 1293529..1294320 (-) 792 WP_202138746.1 shikimate dehydrogenase -
  HG576_RS06055 (HG576_06050) - 1294328..1294918 (-) 591 WP_237393080.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20218.51 Da        Isoelectric Point: 6.2434

>NTDB_id=385403 HG576_RS06030 WP_000482424.1 1289447..1289992(-) (ssb) [Helicobacter pylori strain LIM-003]
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT
YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSMTHEGFNNAYPANHNAPSQDPFNQAPSYAQNAYAKENLQA
QPSKYQNSVPEINIDEEEIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=385403 HG576_RS06030 WP_000482424.1 1289447..1289992(-) (ssb) [Helicobacter pylori strain LIM-003]
ATGTTTAATAAAGTGATTATGGTAGGGCGTTTGACCAGGAATGTGGAGTTGAAATATTTGCCTAGCGGTTCGGCTGCGGC
TACAATAGGTTTAGCCACAAGCAGGCGTTTTAAGAAACAAGACGGCACGCTAGGCGAAGAAGTGTGCTTCATAGATGCTC
GTTTGTTCGGGCGAACGGCTGAAATCGCTAACCAGTATTTAAGCAAGGGTTCAAGCGTTTTGATAGAAGGGCGTTTGACT
TATGAGAGCTGGATGGATCAAACGGGCAAAAAAAATTCCCGCCACACTATCACAGCGGACTCGTTGCAATTTATGGACAA
AAAGTCAGACAATCCCCAGGCAAACGCTATGCAAGATAGCATGACGCATGAGGGTTTCAACAACGCTTATCCTGCTAATC
ATAACGCTCCTAGCCAGGATCCTTTTAACCAAGCCCCAAGTTATGCGCAAAACGCTTACGCTAAAGAGAATTTACAAGCA
CAGCCGTCCAAGTATCAAAACAGCGTGCCTGAAATCAATATTGATGAAGAAGAAATCCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

35.106

100

0.365

Multiple sequence alignment