Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG576_RS05740 Genome accession   NZ_CP051539
Coordinates   1230371..1231420 (+) Length   349 a.a.
NCBI ID   WP_202138728.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-003     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225371..1236420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS05725 (HG576_05720) - 1226369..1227520 (-) 1152 WP_202138726.1 DUF874 family protein -
  HG576_RS05730 (HG576_05725) asd 1227954..1228994 (-) 1041 WP_202138727.1 aspartate-semialdehyde dehydrogenase -
  HG576_RS05735 (HG576_05730) hisS 1228981..1230309 (-) 1329 WP_000632439.1 histidine--tRNA ligase -
  HG576_RS05740 (HG576_05735) waaF 1230371..1231420 (+) 1050 WP_202138728.1 lipopolysaccharide heptosyltransferase II Regulator
  HG576_RS05745 (HG576_05740) - 1231608..1231886 (-) 279 WP_033756199.1 hypothetical protein -
  HG576_RS05750 (HG576_05745) - 1232104..1233093 (+) 990 WP_021177005.1 aldo/keto reductase -
  HG576_RS05755 (HG576_05750) fusA 1233616..1235694 (-) 2079 WP_202138729.1 elongation factor G -
  HG576_RS05760 (HG576_05755) rpsG 1235706..1236173 (-) 468 WP_001254365.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39415.29 Da        Isoelectric Point: 9.7213

>NTDB_id=385402 HG576_RS05740 WP_202138728.1 1230371..1231420(+) (waaF) [Helicobacter pylori strain LIM-003]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPTITCELFKKDEKIEAVFIDDTKKSFFRPLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFLQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAVALLEKGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKLVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385402 HG576_RS05740 WP_202138728.1 1230371..1231420(+) (waaF) [Helicobacter pylori strain LIM-003]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTACCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCCGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTTGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCTTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGTTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTGGCTGCTAGCGCACAAACCCCTTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACTAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367

Multiple sequence alignment