Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG576_RS00555 Genome accession   NZ_CP051539
Coordinates   109755..110213 (-) Length   152 a.a.
NCBI ID   WP_202138928.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-003     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 104755..115213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS00540 (HG576_00540) - 105162..105926 (-) 765 WP_202138925.1 glycosyltransferase family 2 protein -
  HG576_RS00545 (HG576_00545) tlpB 105957..107654 (-) 1698 WP_202138926.1 methyl-accepting chemotaxis protein TlpB -
  HG576_RS00550 (HG576_00550) - 107862..109562 (-) 1701 WP_338325828.1 5'-nucleotidase C-terminal domain-containing protein -
  HG576_RS00555 (HG576_00555) luxS 109755..110213 (-) 459 WP_202138928.1 S-ribosylhomocysteine lyase Regulator
  HG576_RS00560 (HG576_00560) - 110253..111395 (-) 1143 WP_202139217.1 cystathionine gamma-synthase -
  HG576_RS00565 (HG576_00565) - 111416..112333 (-) 918 WP_202138929.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG576_RS00570 (HG576_00570) - 112448..113026 (+) 579 Protein_105 hypothetical protein -
  HG576_RS00575 (HG576_00575) dnaK 113256..115118 (-) 1863 WP_202138930.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17398.81 Da        Isoelectric Point: 6.6035

>NTDB_id=385380 HG576_RS00555 WP_202138928.1 109755..110213(-) (luxS) [Helicobacter pylori strain LIM-003]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIIKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARTFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=385380 HG576_RS00555 WP_202138928.1 109755..110213(-) (luxS) [Helicobacter pylori strain LIM-003]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAACCCAACCAAGATCACATGGACATGCCAAGCC
TGCACTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACAGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAAACGATGCAAGA
CGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCAC
AGAATTTAGCACGCACTTTTTTGGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.278

94.737

0.382