Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | CLR01_RS20810 | Genome accession | NZ_CP043588 |
| Coordinates | 4226552..4227352 (+) | Length | 266 a.a. |
| NCBI ID | WP_021441214.1 | Uniprot ID | A0A4V0HF22 |
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015096 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4221552..4232352
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLR01_RS20775 (CLR01_20875) | gspH | 4221708..4222223 (+) | 516 | WP_023282194.1 | type II secretion system minor pseudopilin GspH | - |
| CLR01_RS20780 (CLR01_20880) | gspI | 4222220..4222585 (+) | 366 | WP_023282193.1 | type II secretion system minor pseudopilin GspI | - |
| CLR01_RS20785 (CLR01_20885) | gspJ | 4222582..4223178 (+) | 597 | WP_004145893.1 | type II secretion system minor pseudopilin GspJ | - |
| CLR01_RS20790 (CLR01_20890) | gspK | 4223175..4224161 (+) | 987 | WP_023282192.1 | type II secretion system minor pseudopilin GspK | - |
| CLR01_RS20795 (CLR01_20895) | gspL | 4224148..4225341 (+) | 1194 | WP_032418425.1 | type II secretion system protein GspL | - |
| CLR01_RS20800 (CLR01_20900) | - | 4225334..4225819 (+) | 486 | WP_023282190.1 | type II secretion system protein M | - |
| CLR01_RS20805 (CLR01_20905) | - | 4225809..4226555 (+) | 747 | WP_023282189.1 | type II secretion system protein N | - |
| CLR01_RS20810 (CLR01_20910) | pilD | 4226552..4227352 (+) | 801 | WP_021441214.1 | A24 family peptidase | Machinery gene |
| CLR01_RS20815 (CLR01_20915) | hrpB | 4227400..4229829 (-) | 2430 | WP_023282188.1 | ATP-dependent helicase HrpB | - |
| CLR01_RS20820 (CLR01_20920) | thpR | 4229902..4230438 (+) | 537 | WP_004145901.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| CLR01_RS20825 (CLR01_20925) | sfsA | 4230438..4231154 (+) | 717 | WP_002888848.1 | DNA/RNA nuclease SfsA | - |
| CLR01_RS20830 (CLR01_20930) | dksA | 4231317..4231772 (+) | 456 | WP_002888845.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 266 a.a. Molecular weight: 29419.04 Da Isoelectric Point: 8.8894
>NTDB_id=385378 CLR01_RS20810 WP_021441214.1 4226552..4227352(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015096]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
Nucleotide
Download Length: 801 bp
>NTDB_id=385378 CLR01_RS20810 WP_021441214.1 4226552..4227352(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015096]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.434 |
99.624 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
46.182 |
100 |
0.477 |
| pilD | Acinetobacter nosocomialis M2 |
46.008 |
98.872 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
45.247 |
98.872 |
0.447 |
| pilD | Neisseria gonorrhoeae MS11 |
43.295 |
98.12 |
0.425 |