Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG578_RS05565 Genome accession   NZ_CP051537
Coordinates   1202848..1203897 (+) Length   349 a.a.
NCBI ID   WP_202134605.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1197848..1208897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS05545 (HG578_05540) - 1197876..1198619 (+) 744 WP_039088468.1 carbonic anhydrase -
  HG578_RS05550 (HG578_05545) - 1198858..1200018 (-) 1161 WP_202134602.1 DUF874 family protein -
  HG578_RS05555 (HG578_05550) asd 1200431..1201471 (-) 1041 WP_202134603.1 aspartate-semialdehyde dehydrogenase -
  HG578_RS05560 (HG578_05555) hisS 1201458..1202786 (-) 1329 WP_202134604.1 histidine--tRNA ligase -
  HG578_RS05565 (HG578_05560) waaF 1202848..1203897 (+) 1050 WP_202134605.1 lipopolysaccharide heptosyltransferase II Regulator
  HG578_RS05570 (HG578_05565) - 1204418..1205407 (+) 990 WP_202134606.1 aldo/keto reductase -
  HG578_RS05575 (HG578_05570) fusA 1205938..1208016 (-) 2079 WP_165526712.1 elongation factor G -
  HG578_RS05580 (HG578_05575) rpsG 1208028..1208495 (-) 468 WP_001254355.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39387.07 Da        Isoelectric Point: 9.5815

>NTDB_id=385366 HG578_RS05565 WP_202134605.1 1202848..1203897(+) (waaF) [Helicobacter pylori strain LIM-005]
MSVNASKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFDLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLSR
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKDEKNHLCMRSITPLEVLEAAHVLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385366 HG578_RS05565 WP_202134605.1 1202848..1203897(+) (waaF) [Helicobacter pylori strain LIM-005]
ATGAGCGTAAATGCGTCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTGACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCCAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGTGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGGATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACGTTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.681

98.854

0.372