Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG578_RS03650 Genome accession   NZ_CP051537
Coordinates   783840..785360 (-) Length   506 a.a.
NCBI ID   WP_202135141.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 778840..790360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS03640 (HG578_03635) - 780412..781715 (-) 1304 Protein_719 restriction endonuclease subunit S -
  HG578_RS03645 (HG578_03640) - 781755..783815 (-) 2061 WP_202135140.1 heavy metal translocating P-type ATPase -
  HG578_RS03650 (HG578_03645) comM 783840..785360 (-) 1521 WP_202135141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HG578_RS03655 (HG578_03650) def 785366..785890 (-) 525 WP_202135142.1 peptide deformylase -
  HG578_RS03660 (HG578_03655) clpP 785895..786482 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HG578_RS03665 (HG578_03660) tig 786503..787858 (-) 1356 WP_202135143.1 trigger factor -
  HG578_RS03670 (HG578_03665) - 787971..788807 (-) 837 WP_202135144.1 outer membrane protein -
  HG578_RS03675 (HG578_03670) hpaA 788837..789619 (-) 783 WP_202135145.1 flagellar sheath lipoprotein HpaA -
  HG578_RS03680 (HG578_03675) moaC 789732..790208 (-) 477 WP_001131543.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57330.39 Da        Isoelectric Point: 8.5420

>NTDB_id=385358 HG578_RS03650 WP_202135141.1 783840..785360(-) (comM) [Helicobacter pylori strain LIM-005]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEARKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=385358 HG578_RS03650 WP_202135141.1 783840..785360(-) (comM) [Helicobacter pylori strain LIM-005]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAGCAAAGAGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCTCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAA
TCATTGCGCCTAAAGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACACCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTGCGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGAAGCTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAGCCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTCGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCTACTAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CGCGAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.204

100

0.366