Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG578_RS00525 Genome accession   NZ_CP051537
Coordinates   109869..110327 (-) Length   152 a.a.
NCBI ID   WP_000783554.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 104869..115327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS00510 (HG578_00510) - 105251..106042 (-) 792 WP_202134839.1 glycosyltransferase family 2 protein -
  HG578_RS00515 (HG578_00515) tlpB 106074..107771 (-) 1698 WP_202134840.1 methyl-accepting chemotaxis protein TlpB -
  HG578_RS00520 (HG578_00520) - 107988..109664 (-) 1677 WP_338325746.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  HG578_RS00525 (HG578_00525) luxS 109869..110327 (-) 459 WP_000783554.1 S-ribosylhomocysteine lyase Regulator
  HG578_RS00530 (HG578_00530) - 110365..111507 (-) 1143 WP_202134842.1 cystathionine gamma-synthase -
  HG578_RS00535 (HG578_00535) - 111528..112445 (-) 918 WP_202135164.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG578_RS00540 (HG578_00540) - 112559..113131 (+) 573 WP_202134843.1 hypothetical protein -
  HG578_RS00545 (HG578_00545) dnaK 113378..115240 (-) 1863 WP_202134844.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17327.69 Da        Isoelectric Point: 6.3774

>NTDB_id=385341 HG578_RS00525 WP_000783554.1 109869..110327(-) (luxS) [Helicobacter pylori strain LIM-005]
MKMNVESFNLDHTKVKAPYVRIADRKKGANGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=385341 HG578_RS00525 WP_000783554.1 109869..110327(-) (luxS) [Helicobacter pylori strain LIM-005]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCAAGCT
TGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
CGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAACAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCAC
AGGATTTAGCGCGCGCTTTTTTGGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

92.763

0.375