Detailed information NTG0385324

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG580_RS04680
• Genome accession: NZ_CP051536
• Coordinates: 989419..990654 (+)
• Length: 411 a.a.
• NCBI ID: WP_202145478.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-007
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 984419..995654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG580_RS04665	-	984831..986765 (+)	1935	Protein_918	type IA DNA topoisomerase	-
HG580_RS08060	-	986765..986893 (+)	129	WP_000243255.1	hypothetical protein	-
HG580_RS04670	-	986895..987881 (+)	987	WP_202145476.1	virB8 family protein	-
HG580_RS04675	-	987881..989422 (+)	1542	WP_202145477.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG580_RS04680	comB10	989419..990654 (+)	1236	WP_202145478.1	DNA type IV secretion system protein ComB10	Machinery gene
HG580_RS04685	-	990724..991017 (+)	294	WP_202145479.1	hypothetical protein	-
HG580_RS04690	-	991010..991273 (+)	264	WP_000564645.1	hypothetical protein	-
HG580_RS07975	-	991270..991573 (+)	304	Protein_925	hypothetical protein	-
HG580_RS04695	-	991573..992514 (+)	942	WP_000625128.1	ATPase, T2SS/T4P/T4SS family	-
HG580_RS04700	-	992511..992966 (+)	456	WP_202145480.1	mobilization protein	-
HG580_RS04705	-	992963..993253 (+)	291	WP_202145481.1	hypothetical protein	-
HG580_RS04710	-	993254..993811 (+)	558	WP_202145482.1	hypothetical protein	-
HG580_RS04715	-	993812..995539 (+)	1728	WP_202145483.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46424.54 Da
• Isoelectric Point: 10.0008

>NTDB_id=385324 HG580_RS04680 WP_202145478.1 989419..990654(+) (comB10) [Helicobacter pylori strain LIM-007]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDEAKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEDEKTRLVILASRISSQKETQPPISIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=385324 HG580_RS04680 WP_202145478.1 989419..990654(+) (comB10) [Helicobacter pylori strain LIM-007]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAGCTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGATGAAAAAACCCGTTTGGTGATTT
TAGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAGCCTCCCATCTCTATAAAAAATAGCGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGTGGTTTTAAAAATTTTAAAAGAAAAAACATAGCAAGCAGTGAAAA
CAAACTTTTAAGAACCATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAGATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCT
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTTAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACTTTGTCAAACGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCAATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.483	70.56	0.384