Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG580_RS00525 Genome accession   NZ_CP051536
Coordinates   103475..103942 (-) Length   155 a.a.
NCBI ID   WP_000856645.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-007     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 98475..108942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG580_RS00510 - 98900..99682 (-) 783 WP_202145938.1 glycosyltransferase family 2 protein -
  HG580_RS00515 tlpB 99713..101410 (-) 1698 WP_202145939.1 methyl-accepting chemotaxis protein TlpB -
  HG580_RS00520 - 101590..103335 (-) 1746 WP_202145940.1 5'-nucleotidase C-terminal domain-containing protein -
  HG580_RS00525 luxS 103475..103942 (-) 468 WP_000856645.1 S-ribosylhomocysteine lyase Regulator
  HG580_RS00530 - 103956..105098 (-) 1143 WP_202145941.1 cystathionine gamma-synthase -
  HG580_RS00535 - 105119..106036 (-) 918 WP_202145942.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG580_RS00540 - 106144..106722 (+) 579 WP_202145943.1 hypothetical protein -
  HG580_RS00545 dnaK 106861..108723 (-) 1863 WP_202145944.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17668.15 Da        Isoelectric Point: 6.8403

>NTDB_id=385301 HG580_RS00525 WP_000856645.1 103475..103942(-) (luxS) [Helicobacter pylori strain LIM-007]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=385301 HG580_RS00525 WP_000856645.1 103475..103942(-) (luxS) [Helicobacter pylori strain LIM-007]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTACGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCGCAGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374