Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG581_RS05585 Genome accession   NZ_CP051535
Coordinates   1201977..1203026 (+) Length   349 a.a.
NCBI ID   WP_202137791.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196977..1208026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS05570 (HG581_05575) - 1198018..1199127 (-) 1110 WP_202137789.1 DUF874 family protein -
  HG581_RS05575 (HG581_05580) asd 1199560..1200600 (-) 1041 WP_078249628.1 aspartate-semialdehyde dehydrogenase -
  HG581_RS05580 (HG581_05585) hisS 1200587..1201915 (-) 1329 WP_202137790.1 histidine--tRNA ligase -
  HG581_RS05585 (HG581_05590) waaF 1201977..1203026 (+) 1050 WP_202137791.1 lipopolysaccharide heptosyltransferase II Regulator
  HG581_RS05590 (HG581_05595) - 1203172..1203564 (-) 393 WP_202137792.1 flagellar protein -
  HG581_RS05595 (HG581_05600) - 1203781..1204770 (+) 990 WP_202137793.1 aldo/keto reductase -
  HG581_RS05600 (HG581_05605) fusA 1205282..1207360 (-) 2079 WP_202137794.1 elongation factor G -
  HG581_RS05605 (HG581_05610) rpsG 1207372..1207839 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39453.20 Da        Isoelectric Point: 9.6622

>NTDB_id=385284 HG581_RS05585 WP_202137791.1 1201977..1203026(+) (waaF) [Helicobacter pylori strain LIM-008]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPKAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLVFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAVLLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSR
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASVQTPLIALFGPTDEKETSPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385284 HG581_RS05585 WP_202137791.1 1201977..1203026(+) (waaF) [Helicobacter pylori strain LIM-008]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAAAGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGCTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTGGTCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGCTGTTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCATTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTCTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.012

97.994

0.372