Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   F0Q09_RS00280 Genome accession   NZ_CP043576
Coordinates   52538..53173 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain T25-27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47538..58173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q09_RS00245 tnpA 47742..48062 (-) 321 WP_010954361.1 IS66-like element accessory protein TnpA -
  F0Q09_RS00250 murB 48635..49654 (-) 1020 WP_003247146.1 UDP-N-acetylmuramate dehydrogenase -
  F0Q09_RS00255 - 49651..50115 (-) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  F0Q09_RS00260 kdsB 50115..50879 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  F0Q09_RS00265 - 50876..51061 (-) 186 WP_003247142.1 Trm112 family protein -
  F0Q09_RS00270 lpxK 51106..52107 (-) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  F0Q09_RS00275 - 52107..52541 (-) 435 WP_003247134.1 ExbD/TolR family protein -
  F0Q09_RS00280 exbB 52538..53173 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  F0Q09_RS00285 comA 53329..55545 (-) 2217 WP_182375260.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  F0Q09_RS00290 - 55688..56194 (+) 507 Protein_50 DUF2062 domain-containing protein -
  F0Q09_RS00295 - 56204..56983 (-) 780 WP_003247128.1 ABC transporter permease -
  F0Q09_RS00300 - 56980..57912 (-) 933 WP_182375261.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=385262 F0Q09_RS00280 WP_003247132.1 52538..53173(-) (exbB) [Pseudomonas putida strain T25-27]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=385262 F0Q09_RS00280 WP_003247132.1 52538..53173(-) (exbB) [Pseudomonas putida strain T25-27]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGTTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment