Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   F0Q04_RS23640 Genome accession   NZ_CP043575
Coordinates   5167222..5168838 (-) Length   538 a.a.
NCBI ID   WP_182343814.1    Uniprot ID   -
Organism   Comamonas koreensis strain T50-37     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5162222..5173838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q04_RS23615 - 5162828..5163145 (-) 318 WP_027010449.1 DMT family transporter -
  F0Q04_RS23620 - 5163366..5163860 (-) 495 WP_116926257.1 putative toxin-antitoxin system toxin component, PIN family -
  F0Q04_RS23625 - 5163857..5165134 (-) 1278 WP_116926256.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  F0Q04_RS23630 - 5165332..5166084 (+) 753 WP_182343810.1 hypothetical protein -
  F0Q04_RS23635 - 5166232..5167146 (+) 915 WP_420093993.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  F0Q04_RS23640 rpoN/rpoN1 5167222..5168838 (-) 1617 WP_182343814.1 RNA polymerase factor sigma-54 Machinery gene
  F0Q04_RS23645 lptB 5168944..5169720 (-) 777 WP_116926389.1 LPS export ABC transporter ATP-binding protein -
  F0Q04_RS23650 lptA 5169744..5170412 (-) 669 WP_116926252.1 lipopolysaccharide transport periplasmic protein LptA -
  F0Q04_RS23660 - 5171986..5172630 (-) 645 WP_021025053.1 thiol:disulfide interchange protein DsbA/DsbL -
  F0Q04_RS23665 - 5172687..5173391 (-) 705 WP_116926251.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 58976.08 Da        Isoelectric Point: 4.4270

>NTDB_id=385261 F0Q04_RS23640 WP_182343814.1 5167222..5168838(-) (rpoN/rpoN1) [Comamonas koreensis strain T50-37]
MMPSLSLRVSQNLTLTPQLQQSIRLLQLSTQELTQEVEQMLDENPFLEREGDEAPEAEAGKEAAESAEAADAADAADKGA
DTAASTDTNNSSDFEPGTSDQPLDFGAGKETGVDAEAAAGDSASDWEEWGGDLPARSSASDDDDETPMSDRRSEHLSLQD
VLHRQALSLRLCQEDRAALYFLIESLNDDGYLEETLAELAQSFGDASDPERYEVLLHHLTVALRLLQSLEPIGVGARNLS
ECMQLQIKAQQRLLDEEGSDTPEADALALETALLVCQESLELLARRDVRKLVQLTGCSDAAVRSALALIAKLEPRPGRPY
ADVDRNTIIPDVIVRLSNERGLPVPGFSVQLNAEVMPRLRVQDVYANALRSHKGSEGHGALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQRNFFVHGELAMRPMVLREIADELGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGSASST
AVKALIKQLLDEESAKKPLSDAKIADLLQAQGIECARRTVAKYREAMRIPPASLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=385261 F0Q04_RS23640 WP_182343814.1 5167222..5168838(-) (rpoN/rpoN1) [Comamonas koreensis strain T50-37]
ATGATGCCGTCGCTGTCGCTGCGCGTATCGCAGAACCTGACCCTGACCCCCCAGCTGCAGCAGTCGATTCGCCTGCTGCA
GCTGTCCACGCAGGAACTGACGCAGGAAGTCGAGCAGATGCTCGACGAAAACCCGTTTCTGGAGCGCGAGGGCGATGAGG
CCCCCGAGGCTGAAGCCGGTAAAGAAGCCGCTGAATCTGCCGAAGCTGCAGACGCTGCAGACGCAGCCGACAAGGGTGCC
GATACTGCTGCCAGCACCGACACCAACAACAGTAGCGATTTCGAGCCCGGAACCTCCGACCAGCCGCTGGATTTTGGCGC
GGGCAAGGAAACCGGCGTCGATGCCGAGGCCGCTGCCGGCGATTCGGCATCGGACTGGGAAGAGTGGGGTGGCGATCTGC
CCGCGCGCTCCAGCGCCAGCGATGACGACGACGAGACGCCGATGTCCGACCGGCGCAGCGAGCACCTGAGCCTGCAGGAT
GTGCTGCACCGCCAGGCCTTGTCGCTGCGCCTGTGCCAGGAAGACCGGGCCGCGCTCTACTTTCTGATTGAATCACTGAA
CGACGACGGCTACCTCGAAGAAACGCTGGCCGAGCTCGCGCAAAGCTTTGGCGACGCCAGTGACCCCGAGCGCTACGAAG
TGCTGCTGCACCACCTGACTGTGGCGCTGCGCTTGCTGCAAAGCCTGGAGCCGATTGGCGTGGGCGCGCGCAACCTGTCC
GAATGCATGCAGCTGCAGATCAAGGCCCAGCAGCGCCTGTTGGATGAAGAGGGCTCGGACACGCCCGAGGCCGATGCGCT
GGCGCTGGAGACCGCTTTGCTGGTCTGCCAGGAATCGCTGGAGCTGCTGGCGCGCCGTGATGTGCGCAAGCTGGTGCAAC
TGACCGGATGCAGTGATGCCGCGGTGCGCAGCGCGCTGGCGCTGATCGCCAAGCTCGAGCCCCGCCCCGGCCGGCCCTAT
GCCGATGTGGACCGCAACACCATCATCCCCGATGTCATCGTGCGACTCAGCAATGAGCGCGGCCTGCCGGTGCCCGGTTT
CAGCGTGCAGCTCAATGCCGAGGTGATGCCGCGCCTGCGCGTGCAGGATGTCTACGCCAATGCCTTGCGCAGCCACAAGG
GCAGCGAAGGCCATGGCGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGAC
ACCATCTTGCGCGTCTCGCAGGCCATCGTCGAGCGCCAGCGCAATTTCTTTGTCCATGGCGAGCTGGCGATGCGCCCCAT
GGTGCTGCGCGAGATTGCCGATGAGCTGGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACGTTCGAGCTCAAGTACTTCTTTGGCTCGGGCCTGGGCACCGAGACCGGCGGCAGTGCGTCGAGCACG
GCGGTCAAGGCGCTGATCAAGCAGCTGCTGGACGAGGAAAGCGCGAAAAAGCCGCTGTCGGATGCAAAAATCGCCGATCT
GCTGCAGGCCCAGGGCATTGAATGCGCGCGCCGCACGGTGGCCAAGTACCGCGAGGCGATGCGCATCCCGCCGGCCAGCC
TGCGCAAGGCGCTGTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(381-536)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(151-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.549

100

0.513

Multiple sequence alignment