Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG581_RS00540 Genome accession   NZ_CP051535
Coordinates   108765..109232 (-) Length   155 a.a.
NCBI ID   WP_202138093.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 103765..114232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS00525 (HG581_00525) - 104159..104938 (-) 780 WP_202138090.1 glycosyltransferase family 2 protein -
  HG581_RS00530 (HG581_00530) tlpB 104969..106666 (-) 1698 WP_202138091.1 methyl-accepting chemotaxis protein TlpB -
  HG581_RS00535 (HG581_00535) - 106878..108623 (-) 1746 WP_202138092.1 5'-nucleotidase C-terminal domain-containing protein -
  HG581_RS00540 (HG581_00540) luxS 108765..109232 (-) 468 WP_202138093.1 S-ribosylhomocysteine lyase Regulator
  HG581_RS00545 (HG581_00545) - 109246..110388 (-) 1143 WP_202138494.1 cystathionine gamma-synthase -
  HG581_RS00550 (HG581_00550) - 110409..111326 (-) 918 WP_198994546.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG581_RS00555 (HG581_00555) - 111441..112019 (+) 579 WP_078241620.1 hypothetical protein -
  HG581_RS00560 (HG581_00560) dnaK 112266..114128 (-) 1863 WP_202138094.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17712.16 Da        Isoelectric Point: 6.6039

>NTDB_id=385256 HG581_RS00540 WP_202138093.1 108765..109232(-) (luxS) [Helicobacter pylori strain LIM-008]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVIDWSP
MGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRDEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=385256 HG581_RS00540 WP_202138093.1 108765..109232(-) (luxS) [Helicobacter pylori strain LIM-008]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTTATAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTATACAGAGGTTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGATGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

90.968

0.387