Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F0Q04_RS07700 Genome accession   NZ_CP043575
Coordinates   1722603..1723817 (-) Length   404 a.a.
NCBI ID   WP_182345106.1    Uniprot ID   -
Organism   Comamonas koreensis strain T50-37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1717603..1728817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q04_RS07685 cutA 1717962..1718324 (+) 363 WP_232539545.1 divalent-cation tolerance protein CutA -
  F0Q04_RS07690 - 1718351..1719130 (-) 780 WP_116924703.1 DeoR/GlpR family DNA-binding transcription regulator -
  F0Q04_RS07695 - 1719278..1722448 (-) 3171 WP_182345105.1 metallophosphoesterase family protein -
  F0Q04_RS07700 pilA 1722603..1723817 (-) 1215 WP_182345106.1 signal recognition particle-docking protein FtsY Machinery gene
  F0Q04_RS07705 - 1723846..1725291 (+) 1446 WP_182345107.1 M16 family metallopeptidase -
  F0Q04_RS07710 - 1725393..1726736 (+) 1344 WP_182345108.1 M16 family metallopeptidase -
  F0Q04_RS07715 rsmD 1726736..1727449 (+) 714 WP_182345109.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  F0Q04_RS07720 coaD 1727554..1728051 (+) 498 WP_043339436.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 41928.15 Da        Isoelectric Point: 7.0000

>NTDB_id=385252 F0Q04_RS07700 WP_182345106.1 1722603..1723817(-) (pilA) [Comamonas koreensis strain T50-37]
MFSFFKKKSPAADAAPSPSAAEPAPAPAPAADVPPPAPQVPSAPLTPIRPVAAEPTKTGWLRGLGMGGKAAAPAPTAAET
VTKNPVTQAPQAPVAPITIASEPASSRDSWMNRLKSGLRKTGSSIATVFTGTKIDEQLYEELEEALLMADTGVKATQHLL
KDLKQRVKDSKTTDPAAVKDLLASALADLLAPLEKPLVIGEHSPTVIMVAGVNGAGKTTSIGKLTKHLADAGQSVLLAAA
DTFRAAAREQLGVWATRNTVEIISQEGGDPAAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADGS
APHEVLLVIDGNTGQNALNQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFSAKEFAQ
ALLA

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=385252 F0Q04_RS07700 WP_182345106.1 1722603..1723817(-) (pilA) [Comamonas koreensis strain T50-37]
ATGTTCAGTTTTTTCAAGAAAAAATCTCCCGCTGCCGACGCAGCCCCCAGCCCTTCCGCCGCCGAGCCAGCGCCTGCGCC
CGCTCCAGCGGCCGATGTCCCGCCGCCCGCACCCCAGGTGCCCAGCGCGCCGCTGACCCCGATCCGCCCTGTGGCTGCCG
AGCCCACCAAGACGGGCTGGCTGCGTGGCCTGGGCATGGGCGGCAAGGCCGCAGCCCCGGCACCCACGGCTGCAGAAACG
GTCACGAAAAACCCAGTTACACAAGCTCCGCAGGCTCCGGTAGCTCCTATCACTATAGCATCCGAGCCCGCCAGCAGCCG
CGACAGCTGGATGAACCGCTTGAAGAGCGGTTTGCGCAAAACCGGCTCGAGCATTGCCACGGTCTTCACCGGCACCAAGA
TCGACGAGCAGCTCTACGAAGAGCTCGAAGAGGCGCTGCTGATGGCCGATACCGGCGTCAAGGCAACCCAGCATCTGCTC
AAAGACCTCAAGCAGCGCGTCAAGGACAGCAAGACCACCGACCCCGCCGCTGTCAAGGACCTGCTGGCCAGCGCGCTGGC
AGATCTGCTCGCGCCACTGGAAAAGCCACTGGTCATTGGCGAGCACAGCCCCACGGTCATCATGGTGGCTGGCGTCAACG
GCGCTGGCAAGACCACCTCGATCGGCAAGCTGACCAAGCACCTGGCCGATGCCGGCCAGAGCGTGCTGCTGGCAGCGGCC
GACACCTTCCGCGCTGCGGCGCGTGAGCAGCTGGGCGTCTGGGCCACCCGCAACACCGTCGAGATCATCAGCCAGGAAGG
CGGCGACCCCGCGGCCGTCAGCTTTGATGCGGTGACCGCCGGCAAGGCCCGGGGCAAGGATGTCGTGCTGGTGGATACCG
CCGGGCGCCTGCCCACGCAGCTGCACCTGATGGAAGAGCTCAAGAAGATCAAACGCGTCGTCACCAAGGCCGATGGCAGC
GCGCCGCACGAGGTGCTGCTGGTCATTGATGGCAACACCGGCCAGAACGCGCTCAACCAGGTGCGCGCCTTTGACGATGC
ACTGCAGCTGACCGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATCGCGCAGGAGC
GCCCCATCCCTGTGTACTTCATCGGTGTGGGTGAAAAGGTCGAAGACCTCGAGACCTTCAGCGCCAAGGAATTTGCCCAG
GCGCTGCTCGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(123-186)

SRP54-type protein, GTPase domain (SRP54)

(204-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.238

100

0.522

Multiple sequence alignment