Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   F0Q04_RS07300 Genome accession   NZ_CP043575
Coordinates   1631746..1632132 (+) Length   128 a.a.
NCBI ID   WP_021027286.1    Uniprot ID   -
Organism   Comamonas koreensis strain T50-37     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1626746..1637132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q04_RS07280 - 1627687..1628175 (+) 489 WP_116924634.1 c-type cytochrome -
  F0Q04_RS07285 - 1628323..1629033 (+) 711 WP_116924635.1 Bax inhibitor-1 family protein -
  F0Q04_RS07290 hemL 1629122..1630420 (-) 1299 WP_116924636.1 glutamate-1-semialdehyde 2,1-aminomutase -
  F0Q04_RS07295 thiD 1630526..1631440 (-) 915 WP_232539537.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F0Q04_RS07300 pilG 1631746..1632132 (+) 387 WP_021027286.1 response regulator Regulator
  F0Q04_RS07305 - 1632142..1632507 (+) 366 WP_021027285.1 response regulator -
  F0Q04_RS07310 - 1632511..1633038 (+) 528 WP_021027284.1 chemotaxis protein CheW -
  F0Q04_RS07315 - 1633077..1635344 (+) 2268 WP_232539538.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14300.45 Da        Isoelectric Point: 4.7316

>NTDB_id=385251 F0Q04_RS07300 WP_021027286.1 1631746..1632132(+) (pilG) [Comamonas koreensis strain T50-37]
MTVSADNFKVLVVDDSNTIRRSAEIFLKQGGYEVLLAEDGFDALSKINDFKPDMVFCDILMPKLDGYQTCAIVKRNDAFA
STPVVMLSSKDGVFDKARGRMVGCEDYLTKPFTKDQLLETVGRFVAER

Nucleotide


Download         Length: 387 bp        

>NTDB_id=385251 F0Q04_RS07300 WP_021027286.1 1631746..1632132(+) (pilG) [Comamonas koreensis strain T50-37]
GTGACAGTTTCCGCAGACAACTTCAAGGTATTGGTGGTCGACGATAGCAATACCATTCGCAGAAGTGCTGAGATTTTTCT
CAAGCAGGGCGGCTATGAGGTGCTGCTTGCCGAAGACGGCTTCGACGCCCTCTCCAAAATCAACGATTTCAAGCCGGACA
TGGTGTTTTGCGACATCCTGATGCCAAAACTGGACGGCTACCAAACCTGCGCCATCGTCAAGCGCAATGATGCTTTTGCA
TCGACACCCGTGGTCATGCTGTCGTCCAAGGACGGCGTCTTTGACAAGGCCCGGGGACGAATGGTGGGGTGTGAAGACTA
CCTCACCAAGCCATTTACCAAAGATCAATTACTGGAAACCGTCGGACGTTTCGTTGCCGAGCGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.333

93.75

0.547

Multiple sequence alignment