Detailed information NTG0385246

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: F0Q04_RS01480
• Genome accession: NZ_CP043575
• Coordinates: 297199..298584 (-)
• Length: 461 a.a.
• NCBI ID: WP_116926736.1
• Uniprot ID: A0A363RII3
• Organism: Comamonas koreensis strain T50-37
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 292199..303584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0Q04_RS01460	-	292857..294320 (+)	1464	WP_116926850.1	S1C family serine protease	-
F0Q04_RS01465	-	294317..295396 (+)	1080	WP_116926739.1	FHA domain-containing protein	-
F0Q04_RS01470	-	295494..296498 (+)	1005	WP_182344093.1	aldo/keto reductase	-
F0Q04_RS01475	-	296520..297194 (-)	675	WP_116926737.1	phytanoyl-CoA dioxygenase family protein	-
F0Q04_RS01480	radA	297199..298584 (-)	1386	WP_116926736.1	DNA repair protein RadA	Machinery gene
F0Q04_RS01485	-	298720..299346 (+)	627	WP_182344095.1	glutathione S-transferase family protein	-
F0Q04_RS01490	-	299360..300235 (-)	876	WP_182344097.1	substrate-binding domain-containing protein	-
F0Q04_RS01495	-	300281..301903 (-)	1623	WP_182344099.1	ABC transporter substrate-binding protein	-
F0Q04_RS01500	-	302074..302691 (-)	618	WP_182344101.1	4'-phosphopantetheinyl transferase family protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 48175.37 Da
• Isoelectric Point: 7.0606

>NTDB_id=385246 F0Q04_RS01480 WP_116926736.1 297199..298584(-) (radA) [Comamonas koreensis strain T50-37]
MAKEKSVYICSECGGTSPRWLGKCPACNAWNTLVESAAESAGGGKNRLSQTGRTGYAGQAQAVTPLAAIEATEVARTPSG
IAELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAVDALQRQGLPALYVTGEESGAQVALRSRRLGLDNSQVDVLSEIQL
EKILATCESRQPAIVIIDSIQTMYSDQLSSAPGSVAQVRECAAHLTRMAKSTGIAVVLVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVNNPSAIFLSQHSEPVPGSCVLVTLEGSRPLLVEIQALVD
DGGPSPRRLSVGLDRDRLAMLLAVLNRHAGVACADQDVFVNAVGGVRIGEPAADLAVMLSITSSLRGKALPKGFIAFGEV
GLAGEVRPAPRGQERLKEAAKLGFSVAVVPRANAPKKPIEGITIHPVDRVDEAISLVRGLD

Nucleotide

• Length: 1386 bp

>NTDB_id=385246 F0Q04_RS01480 WP_116926736.1 297199..298584(-) (radA) [Comamonas koreensis strain T50-37]
ATGGCCAAAGAAAAATCCGTTTACATCTGCAGCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCCGCTTG
CAATGCCTGGAACACCCTGGTGGAGAGCGCCGCCGAATCGGCAGGTGGCGGCAAGAACCGCCTGAGCCAGACCGGCCGCA
CCGGTTACGCCGGCCAGGCCCAGGCCGTCACGCCGCTGGCCGCCATCGAGGCCACCGAGGTGGCTCGCACCCCCAGCGGC
ATTGCCGAGCTGGACCGGGTGCTGGGCGGCGGCATTGTCGAAGGCGGGGTGGTGCTGATCGGCGGCGACCCGGGCATTGG
CAAATCGACCTTGCTGCTGCAGGCGGTGGATGCGCTGCAGCGCCAGGGGCTGCCCGCCCTGTATGTGACCGGTGAGGAAA
GTGGCGCGCAAGTGGCGCTGCGCTCGCGCCGGCTGGGGCTGGACAACAGCCAGGTCGATGTGCTGAGCGAGATCCAGCTG
GAGAAGATTCTGGCCACCTGCGAGAGCAGGCAGCCGGCCATCGTCATCATCGACTCGATCCAAACCATGTACTCGGACCA
GCTGAGTTCGGCCCCCGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCACCTGACGCGCATGGCCAAGAGCACCGGCA
TCGCGGTGGTACTGGTCGGCCATGTGACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTCGAACACATGGTCGATACC
GTGCTGTACTTTGAAGGCGACACGCACAGCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGA
GATTGGCGTCTTCGCGATGACGGAAAAAGGCCTCAAGGGCGTGAACAACCCCAGCGCCATCTTCCTGAGCCAGCACAGCG
AGCCGGTGCCCGGCAGCTGCGTGCTCGTCACCCTGGAAGGCTCGCGCCCGCTGTTGGTCGAGATCCAGGCGCTGGTGGAT
GACGGCGGCCCCAGCCCGCGCCGCCTGTCGGTGGGCCTGGACCGCGACCGCCTGGCGATGCTGCTGGCCGTGCTCAACCG
CCATGCCGGCGTGGCCTGCGCCGACCAGGATGTGTTTGTCAACGCCGTGGGCGGCGTTCGCATTGGCGAGCCAGCCGCTG
ACCTGGCTGTCATGCTCTCCATCACCAGCAGCCTGCGCGGCAAGGCACTGCCCAAGGGCTTTATCGCCTTTGGCGAGGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCCCCGCGCGGCCAGGAACGCCTGAAGGAAGCCGCCAAGCTGGGCTTTAGCGTCGC
CGTGGTGCCCAGAGCCAATGCGCCCAAAAAGCCGATCGAGGGCATCACGATCCACCCGGTGGACCGGGTGGACGAGGCGA
TATCGCTGGTGCGGGGATTGGACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (68-226)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A363RII3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.696	99.783	0.486
radA	Streptococcus mitis NCTC 12261	45.055	98.698	0.445
radA	Streptococcus pneumoniae D39	45.843	96.529	0.443
radA	Streptococcus pneumoniae TIGR4	45.843	96.529	0.443
radA	Streptococcus pneumoniae R6	45.843	96.529	0.443
radA	Streptococcus pneumoniae Rx1	45.843	96.529	0.443
radA	Streptococcus mitis SK321	45.946	96.312	0.443