Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HG582_RS05530 Genome accession   NZ_CP051534
Coordinates   1176785..1177558 (+) Length   257 a.a.
NCBI ID   WP_202143673.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-009     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171785..1182558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG582_RS05525 (HG582_05530) hopL 1173080..1176769 (+) 3690 WP_202143672.1 Hop family outer membrane protein HopL -
  HG582_RS05530 (HG582_05535) proC 1176785..1177558 (+) 774 WP_202143673.1 pyrroline-5-carboxylate reductase Machinery gene
  HG582_RS05535 (HG582_05540) - 1177585..1178118 (+) 534 WP_000549892.1 Fic/DOC family protein -
  HG582_RS05540 (HG582_05545) ybeY 1178362..1178784 (-) 423 WP_202143674.1 rRNA maturation RNase YbeY -
  HG582_RS05545 (HG582_05550) - 1178836..1179330 (-) 495 WP_000516050.1 flavodoxin -
  HG582_RS05550 (HG582_05555) - 1179421..1180002 (-) 582 WP_202143675.1 DedA family protein -
  HG582_RS05555 (HG582_05560) ccoS 1180127..1180318 (+) 192 WP_001090956.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HG582_RS05560 (HG582_05565) - 1180342..1181313 (+) 972 WP_202143676.1 NAD(P)/FAD-dependent oxidoreductase -
  HG582_RS05565 (HG582_05570) - 1181320..1182480 (-) 1161 WP_202143677.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28245.78 Da        Isoelectric Point: 6.4894

>NTDB_id=385240 HG582_RS05530 WP_202143673.1 1176785..1177558(+) (proC) [Helicobacter pylori strain LIM-009]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSDAIDSLHYLKCMPNIASKFALSSTAVCEKSPMPLISEKALSVIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=385240 HG582_RS05530 WP_202143673.1 1176785..1177558(+) (proC) [Helicobacter pylori strain LIM-009]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAGATCTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATTG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAGGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTAAATTTTGAAGCTTTAAGTGATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCGAAAAGGCTTTGAGTGTTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
TCTAGCGTAGCGACAAACGGGAGCGCACTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTTATAGAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment