Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG582_RS00545 Genome accession   NZ_CP051534
Coordinates   112246..112713 (-) Length   155 a.a.
NCBI ID   WP_202143971.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-009     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 107246..117713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG582_RS00535 (HG582_00540) tlpB 108430..110127 (-) 1698 WP_202143969.1 methyl-accepting chemotaxis protein TlpB -
  HG582_RS00540 (HG582_00545) - 110333..112078 (-) 1746 WP_202143970.1 5'-nucleotidase C-terminal domain-containing protein -
  HG582_RS00545 (HG582_00550) luxS 112246..112713 (-) 468 WP_202143971.1 S-ribosylhomocysteine lyase Regulator
  HG582_RS00550 (HG582_00555) - 112751..113893 (-) 1143 WP_202143972.1 cystathionine gamma-synthase -
  HG582_RS00555 (HG582_00560) - 113918..114835 (-) 918 WP_202143973.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG582_RS00560 (HG582_00565) - 115004..115534 (+) 531 WP_202143974.1 hypothetical protein -
  HG582_RS00565 (HG582_00570) dnaK 115776..117638 (-) 1863 WP_202143975.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17670.13 Da        Isoelectric Point: 7.1165

>NTDB_id=385217 HG582_RS00545 WP_202143971.1 112246..112713(-) (luxS) [Helicobacter pylori strain LIM-009]
MKTSKMNVESFNLDHTKVKAPYVRVADRKKGVNGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=385217 HG582_RS00545 WP_202143971.1 112246..112713(-) (luxS) [Helicobacter pylori strain LIM-009]
ATGAAAACGTCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATGTGATTGTCAAATATGATGTGCGCTTCAAACAACCCAACCAAGATCACATGGACA
TGCCTAGCCTACACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGGTTTTAGAGGTTTTAGAAAAGAC
AATGCAAGACGTGTTAAAGGCTAAAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCCAAGAATTTAGCGCGTGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

43.262

90.968

0.394

Multiple sequence alignment