Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0P98_RS12175 Genome accession   NZ_CP043570
Coordinates   2657288..2658664 (-) Length   458 a.a.
NCBI ID   WP_056931002.1    Uniprot ID   -
Organism   Stenotrophomonas acidaminiphila strain T25-65     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2652288..2663664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0P98_RS12150 - 2652514..2653308 (-) 795 WP_225546690.1 aminotransferase class IV family protein -
  F0P98_RS12155 - 2653305..2654375 (-) 1071 WP_054664239.1 nitronate monooxygenase -
  F0P98_RS12160 ffh 2654451..2655830 (-) 1380 WP_054664236.1 signal recognition particle protein -
  F0P98_RS12165 ccsA 2655949..2656743 (+) 795 WP_056931003.1 cytochrome c biogenesis protein CcsA -
  F0P98_RS12170 - 2656772..2657242 (-) 471 WP_225546689.1 hypothetical protein -
  F0P98_RS12175 radA 2657288..2658664 (-) 1377 WP_056931002.1 DNA repair protein RadA Machinery gene
  F0P98_RS12180 - 2658803..2660860 (+) 2058 WP_056931001.1 bifunctional diguanylate cyclase/phosphodiesterase -
  F0P98_RS12185 cyoD 2660983..2661324 (-) 342 WP_054664221.1 cytochrome o ubiquinol oxidase subunit IV -
  F0P98_RS12190 cyoC 2661324..2661962 (-) 639 WP_054664219.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48155.45 Da        Isoelectric Point: 7.0909

>NTDB_id=385214 F0P98_RS12175 WP_056931002.1 2657288..2658664(-) (radA) [Stenotrophomonas acidaminiphila strain T25-65]
MAKNRTAYVCSECGAEYSKWQGQCGECGAWNVLAEVVLESAAAAKAPAARRGGWAGKLEPPKITALKDVQQSEHARVSTG
IGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQALARMAGSLPVLYVTGEESLAQVAGRAVRLDLPLDGLDALAETGVE
LILQHAAAARPRLIVADSVQTLWTETLTAAPGSVSQVRESAARLVRFAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGESGSRFRVLRAFKNRFGAVNELGVFAMGEKGLKEVPNPSAIFLSGGSTRQPGSCVMVTREGTRPLLVEVQALVDS
SPLSNPRRVAVGLEQNRLAMLLAVLHRHGGVMVGDQDVFINVVGGIRVQETAVDLPVLLAVLSSLRDQPLAEKTIAFGEV
GLSGEIRPVPNGEERLREAATHGFKRAIVPRANAPKAGSVKGMEVIAVERLAEAIEAA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=385214 F0P98_RS12175 WP_056931002.1 2657288..2658664(-) (radA) [Stenotrophomonas acidaminiphila strain T25-65]
ATGGCGAAGAACCGCACCGCCTATGTCTGCAGCGAATGCGGCGCCGAGTACAGCAAATGGCAGGGCCAGTGCGGCGAATG
CGGCGCCTGGAACGTCCTGGCCGAGGTGGTGCTGGAAAGCGCGGCCGCGGCGAAGGCGCCGGCCGCGCGCCGCGGCGGCT
GGGCCGGCAAGCTCGAGCCGCCGAAGATCACCGCGCTCAAGGACGTGCAGCAGAGCGAGCATGCGCGGGTTTCCACCGGC
ATCGGCGAGTTCGACCGGGTGCTGGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGGTCGGCGGCGACCCCGGCATCGG
CAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAGGATGGCCGGCAGCCTGCCGGTGCTGTACGTGACCGGCGAGGAATCCC
TGGCGCAGGTGGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGGCTGGATGCGCTGGCCGAGACCGGCGTCGAA
CTGATCCTGCAGCACGCCGCCGCGGCGCGCCCCAGGCTGATCGTCGCCGACTCGGTGCAGACGCTGTGGACCGAGACGCT
GACCGCCGCGCCGGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCACGGCTGGTGCGCTTTGCCAAGGAGACCGGCACCG
CGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGACGCGGTG
CTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGGGTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACT
GGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTGCCCAATCCCTCGGCCATCTTCCTGTCCGGCGGCAGCACGC
GCCAGCCCGGCAGCTGCGTGATGGTCACCCGCGAGGGCACCCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGATTCC
TCGCCGCTGTCCAACCCGCGCCGGGTCGCGGTGGGACTGGAGCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCG
CCATGGCGGGGTGATGGTTGGCGACCAGGACGTGTTCATCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGGTCG
ACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCAGCCGTTGGCGGAGAAGACCATCGCCTTCGGCGAGGTC
GGGCTGTCCGGCGAGATCCGCCCTGTACCCAATGGCGAGGAGCGCCTGCGCGAGGCGGCCACCCATGGTTTCAAGCGCGC
CATCGTACCCCGCGCCAACGCGCCCAAGGCCGGTTCGGTCAAGGGCATGGAGGTGATCGCGGTCGAGCGGCTGGCCGAAG
CGATCGAGGCGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.489
  radA Streptococcus mitis NCTC 12261

42.763

99.563

0.426
  radA Streptococcus pneumoniae Rx1

42.763

99.563

0.426
  radA Streptococcus pneumoniae D39

42.763

99.563

0.426
  radA Streptococcus pneumoniae R6

42.763

99.563

0.426
  radA Streptococcus pneumoniae TIGR4

42.763

99.563

0.426
  radA Streptococcus mitis SK321

42.544

99.563

0.424

Multiple sequence alignment