Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG583_RS06135 Genome accession   NZ_CP051533
Coordinates   1312518..1313567 (+) Length   349 a.a.
NCBI ID   WP_202142745.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307518..1318567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS06120 (HG583_06100) - 1308367..1309668 (-) 1302 WP_202142743.1 DUF874 family protein -
  HG583_RS06125 (HG583_06105) asd 1310101..1311141 (-) 1041 WP_202142744.1 aspartate-semialdehyde dehydrogenase -
  HG583_RS06130 (HG583_06110) hisS 1311128..1312456 (-) 1329 WP_128016766.1 histidine--tRNA ligase -
  HG583_RS06135 (HG583_06115) waaF 1312518..1313567 (+) 1050 WP_202142745.1 lipopolysaccharide heptosyltransferase II Regulator
  HG583_RS06140 (HG583_06120) - 1313763..1314089 (-) 327 WP_000744162.1 hypothetical protein -
  HG583_RS06145 (HG583_06125) - 1314307..1315296 (+) 990 WP_202142746.1 aldo/keto reductase -
  HG583_RS06150 (HG583_06130) fusA 1315839..1317917 (-) 2079 WP_040159101.1 elongation factor G -
  HG583_RS06155 (HG583_06135) rpsG 1317929..1318396 (-) 468 WP_115806865.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39490.36 Da        Isoelectric Point: 9.9462

>NTDB_id=385199 HG583_RS06135 WP_202142745.1 1312518..1313567(+) (waaF) [Helicobacter pylori strain LIM-010]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAKTATALLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385199 HG583_RS06135 WP_202142745.1 1312518..1313567(+) (waaF) [Helicobacter pylori strain LIM-010]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCCAAAACCGCGACTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.081

98.567

0.375

Multiple sequence alignment